Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2038 | 3' | -53 | NC_001347.2 | + | 631 | 0.66 | 0.994709 |
Target: 5'- uGCGC-UCCAGugGUaCGcgccugccgcGCGUCuUCCu -3' miRNA: 3'- -CGUGaAGGUCugCAaGC----------CGCAGcAGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 1324 | 0.67 | 0.985279 |
Target: 5'- cGCGCagCCAGAUGaaCGGCGUgGg-- -3' miRNA: 3'- -CGUGaaGGUCUGCaaGCCGCAgCagg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 17612 | 0.67 | 0.989708 |
Target: 5'- aGCACUUUguGuagg-CGGCG-CGUCCc -3' miRNA: 3'- -CGUGAAGguCugcaaGCCGCaGCAGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 40514 | 0.68 | 0.979525 |
Target: 5'- cGgGCUUCgGGACGguguUUCGGCG-CGcugCCg -3' miRNA: 3'- -CgUGAAGgUCUGC----AAGCCGCaGCa--GG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 78341 | 0.72 | 0.882355 |
Target: 5'- cGCGCguggUCCGGGCGgaccCGGCGUgGUg- -3' miRNA: 3'- -CGUGa---AGGUCUGCaa--GCCGCAgCAgg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 81525 | 0.69 | 0.972248 |
Target: 5'- -gACUUCCAcGACGUuguuuucaccgUCGcCGUCGUCa -3' miRNA: 3'- cgUGAAGGU-CUGCA-----------AGCcGCAGCAGg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 94310 | 0.76 | 0.701866 |
Target: 5'- aGCGCgaucgccgcCCAcGGCGUccUCGGCGUCGUCg -3' miRNA: 3'- -CGUGaa-------GGU-CUGCA--AGCCGCAGCAGg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 98032 | 0.66 | 0.995419 |
Target: 5'- aCGCUccUCCGGACGaaacgccgCGGCGgcagCGgCCg -3' miRNA: 3'- cGUGA--AGGUCUGCaa------GCCGCa---GCaGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 106224 | 0.66 | 0.994709 |
Target: 5'- cCACgagCCAGACGaggcggCGGCGguggCGUUg -3' miRNA: 3'- cGUGaa-GGUCUGCaa----GCCGCa---GCAGg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 129162 | 0.66 | 0.992027 |
Target: 5'- cGgGCUUCCGuGGCGgacauagGGCGUCcUCCu -3' miRNA: 3'- -CgUGAAGGU-CUGCaag----CCGCAGcAGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 142422 | 0.76 | 0.711631 |
Target: 5'- cGCGC--CCAGugGcgUCGGCGcggCGUCCg -3' miRNA: 3'- -CGUGaaGGUCugCa-AGCCGCa--GCAGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 161564 | 0.7 | 0.956261 |
Target: 5'- uGCACUUUUugauGACGcgCGGCGcCG-CCg -3' miRNA: 3'- -CGUGAAGGu---CUGCaaGCCGCaGCaGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 164069 | 0.68 | 0.977278 |
Target: 5'- aGCGCUUUCAGAauUUCG-CGUCGgUUCa -3' miRNA: 3'- -CGUGAAGGUCUgcAAGCcGCAGC-AGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 165580 | 0.69 | 0.95987 |
Target: 5'- cGCGacUCCAGGCGgcgCGGCacuucGUCGcCCa -3' miRNA: 3'- -CGUgaAGGUCUGCaa-GCCG-----CAGCaGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 168093 | 0.74 | 0.821352 |
Target: 5'- aGCACcgugUCCAGuuCGgugUCGGUGUCGcgCCg -3' miRNA: 3'- -CGUGa---AGGUCu-GCa--AGCCGCAGCa-GG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 170053 | 0.68 | 0.983519 |
Target: 5'- gGguUUUaCgAGugGUggCGGCGUCGUCa -3' miRNA: 3'- -CguGAA-GgUCugCAa-GCCGCAGCAGg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 172337 | 0.67 | 0.990926 |
Target: 5'- uCugUUCCAGGCGgcacCGGCGa--UCCa -3' miRNA: 3'- cGugAAGGUCUGCaa--GCCGCagcAGG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 173102 | 0.66 | 0.992027 |
Target: 5'- uGCACguggaUCUAGAU-UUCGGCGUgGUggCCg -3' miRNA: 3'- -CGUGa----AGGUCUGcAAGCCGCAgCA--GG- -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 178070 | 0.71 | 0.919431 |
Target: 5'- -gACUgaUCCAGGCG-UCGGCGUUGg-- -3' miRNA: 3'- cgUGA--AGGUCUGCaAGCCGCAGCagg -5' |
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2038 | 3' | -53 | NC_001347.2 | + | 181181 | 0.75 | 0.73765 |
Target: 5'- cGUACg-CCAGuACGUcuugguggacacuuUCGGCGUCGUCUa -3' miRNA: 3'- -CGUGaaGGUC-UGCA--------------AGCCGCAGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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