miRNA: 3'- cGUGAAg--------GUCUGCAa--GCCGCAGCAGg -5'
miRNA: 3'- -CGUGa----AGGUCUGcAAGCCGCAgCA--GG- -5'
miRNA: 3'- -CgUGAAGGU-CUGCaag----CCGCAGcAGG- -5'
miRNA: 3'- -CguGAA-GgUCugCAa-GCCGCAGCAGg -5'
miRNA: 3'- -CGUGaaGGUCugCa-AGCCGCa--GCAGG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2038 | 3' | -53 | NC_001347.2 | + | 220409 | 0.66 | 0.992027 |
|
Target: 5'- aCGCUUgugaggugaCAGAUGUgugUGGCGUCGUUg -3' miRNA: 3'- cGUGAAg--------GUCUGCAa--GCCGCAGCAGg -5' |
|||||||
| 2038 | 3' | -53 | NC_001347.2 | + | 173102 | 0.66 | 0.992027 |
|
Target: 5'- uGCACguggaUCUAGAU-UUCGGCGUgGUggCCg -3' miRNA: 3'- -CGUGa----AGGUCUGcAAGCCGCAgCA--GG- -5' |
|||||||
| 2038 | 3' | -53 | NC_001347.2 | + | 129162 | 0.66 | 0.992027 |
|
Target: 5'- cGgGCUUCCGuGGCGgacauagGGCGUCcUCCu -3' miRNA: 3'- -CgUGAAGGU-CUGCaag----CCGCAGcAGG- -5' |
|||||||
| 2038 | 3' | -53 | NC_001347.2 | + | 170053 | 0.68 | 0.983519 |
|
Target: 5'- gGguUUUaCgAGugGUggCGGCGUCGUCa -3' miRNA: 3'- -CguGAA-GgUCugCAa-GCCGCAGCAGg -5' |
|||||||
| 2038 | 3' | -53 | NC_001347.2 | + | 142422 | 0.76 | 0.711631 |
|
Target: 5'- cGCGC--CCAGugGcgUCGGCGcggCGUCCg -3' miRNA: 3'- -CGUGaaGGUCugCa-AGCCGCa--GCAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home