miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20380 3' -50.9 NC_004687.1 + 141013 0.66 0.994165
Target:  5'- cCUGGAUgCGGCuggcGGGCaCGGUGuAGGu -3'
miRNA:   3'- uGACCUA-GUCGuu--UCUG-GCCACuUCU- -5'
20380 3' -50.9 NC_004687.1 + 107960 0.66 0.994165
Target:  5'- gGCUucGGUCGGCu-GGGCCGGaucUGggGAc -3'
miRNA:   3'- -UGAc-CUAGUCGuuUCUGGCC---ACuuCU- -5'
20380 3' -50.9 NC_004687.1 + 27107 0.66 0.994165
Target:  5'- aGCUGGAUCGGCAAcgacuucguccAGGCCuuc-GAGAc -3'
miRNA:   3'- -UGACCUAGUCGUU-----------UCUGGccacUUCU- -5'
20380 3' -50.9 NC_004687.1 + 91545 0.66 0.994165
Target:  5'- uCUGGGUgUAGCGGuccGCCGG-GAAGAu -3'
miRNA:   3'- uGACCUA-GUCGUUuc-UGGCCaCUUCU- -5'
20380 3' -50.9 NC_004687.1 + 63269 0.66 0.993242
Target:  5'- cCUGGAcccaccaggugaUCAGCAugcaGCCGGUacaGAAGAg -3'
miRNA:   3'- uGACCU------------AGUCGUuuc-UGGCCA---CUUCU- -5'
20380 3' -50.9 NC_004687.1 + 143555 0.66 0.993242
Target:  5'- aGCgUGGG-CGGC--AGGCCGGUGGuGGAg -3'
miRNA:   3'- -UG-ACCUaGUCGuuUCUGGCCACU-UCU- -5'
20380 3' -50.9 NC_004687.1 + 130838 0.66 0.993242
Target:  5'- gGCgUGGAUCAGCGccuuGACCaGUucgucGAAGAc -3'
miRNA:   3'- -UG-ACCUAGUCGUuu--CUGGcCA-----CUUCU- -5'
20380 3' -50.9 NC_004687.1 + 75231 0.66 0.992207
Target:  5'- --gGGAUCGGCAGcuguuCCGGUGGGa- -3'
miRNA:   3'- ugaCCUAGUCGUUucu--GGCCACUUcu -5'
20380 3' -50.9 NC_004687.1 + 136358 0.66 0.992207
Target:  5'- uGCUGGggCAaucCGAAGcugaugagagaGCUGGUGAAGAa -3'
miRNA:   3'- -UGACCuaGUc--GUUUC-----------UGGCCACUUCU- -5'
20380 3' -50.9 NC_004687.1 + 138974 0.66 0.991985
Target:  5'- cCUGGAgcucggcggcggCAGCGGAGGCCcgGGUGccGGAg -3'
miRNA:   3'- uGACCUa-----------GUCGUUUCUGG--CCACu-UCU- -5'
20380 3' -50.9 NC_004687.1 + 79680 0.66 0.98976
Target:  5'- -aUGGccagcauUCAGCAGGGGCCGaUGGAGu -3'
miRNA:   3'- ugACCu------AGUCGUUUCUGGCcACUUCu -5'
20380 3' -50.9 NC_004687.1 + 17431 0.66 0.989623
Target:  5'- --cGGA-CAGCGAGGAgaugagcCCGGUGAugucGGAc -3'
miRNA:   3'- ugaCCUaGUCGUUUCU-------GGCCACU----UCU- -5'
20380 3' -50.9 NC_004687.1 + 86610 0.66 0.988329
Target:  5'- cGCUGGG-CGGCAucgccgacaacGAGcgcuaccggcuGCCGGUGGAGc -3'
miRNA:   3'- -UGACCUaGUCGU-----------UUC-----------UGGCCACUUCu -5'
20380 3' -50.9 NC_004687.1 + 121247 0.67 0.986749
Target:  5'- cGCUGGGUCuGCAcGGcACCGGUc---- -3'
miRNA:   3'- -UGACCUAGuCGUuUC-UGGCCAcuucu -5'
20380 3' -50.9 NC_004687.1 + 30605 0.67 0.986749
Target:  5'- --cGaGAUCGGCAGAccaaccgcGACCGGUGucGGc -3'
miRNA:   3'- ugaC-CUAGUCGUUU--------CUGGCCACuuCU- -5'
20380 3' -50.9 NC_004687.1 + 3560 0.67 0.985009
Target:  5'- uGCUGGucuUCGGCGugcuggugcAGACCaugcacguGGUGggGAg -3'
miRNA:   3'- -UGACCu--AGUCGUu--------UCUGG--------CCACuuCU- -5'
20380 3' -50.9 NC_004687.1 + 137541 0.67 0.985009
Target:  5'- cACUGG-UCGGC--GGGCCGuGgccgGAAGAg -3'
miRNA:   3'- -UGACCuAGUCGuuUCUGGC-Ca---CUUCU- -5'
20380 3' -50.9 NC_004687.1 + 120796 0.67 0.985009
Target:  5'- gGCUGGuucucCAGCGGcgccGGugCGGgcgGAGGAg -3'
miRNA:   3'- -UGACCua---GUCGUU----UCugGCCa--CUUCU- -5'
20380 3' -50.9 NC_004687.1 + 20763 0.67 0.985009
Target:  5'- --aGGGcCAGC-AGGACUGGUGgcGAc -3'
miRNA:   3'- ugaCCUaGUCGuUUCUGGCCACuuCU- -5'
20380 3' -50.9 NC_004687.1 + 67203 0.67 0.984826
Target:  5'- cGCUGGcguugggcaugguGUCGGUGAcauagcugGGGCCGGUGucGAu -3'
miRNA:   3'- -UGACC-------------UAGUCGUU--------UCUGGCCACuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.