miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20384 3' -59.2 NC_004687.1 + 38915 0.66 0.810005
Target:  5'- aGACCggGCgguguugaccaGCACGCC-CGCcgGGugCa -3'
miRNA:   3'- gCUGGa-CGa----------CGUGCGGaGCGa-CCugG- -5'
20384 3' -59.2 NC_004687.1 + 67310 0.66 0.810005
Target:  5'- cCGACCaGCUGCA--CC-CGCUcGGCCa -3'
miRNA:   3'- -GCUGGaCGACGUgcGGaGCGAcCUGG- -5'
20384 3' -59.2 NC_004687.1 + 108078 0.66 0.810005
Target:  5'- cCGAgCUGCUcGacgAUGCCuUCGUcGGACCg -3'
miRNA:   3'- -GCUgGACGA-Cg--UGCGG-AGCGaCCUGG- -5'
20384 3' -59.2 NC_004687.1 + 58339 0.66 0.810005
Target:  5'- aGGCCgagGCUGcCGCGCggCGCgaucucaaGGACUg -3'
miRNA:   3'- gCUGGa--CGAC-GUGCGgaGCGa-------CCUGG- -5'
20384 3' -59.2 NC_004687.1 + 71057 0.66 0.810005
Target:  5'- gCGGCCUucuugcGCggcGCGCGCUUC-UUGGGCUg -3'
miRNA:   3'- -GCUGGA------CGa--CGUGCGGAGcGACCUGG- -5'
20384 3' -59.2 NC_004687.1 + 60976 0.66 0.810005
Target:  5'- aGGgCUGCUGCcucCGguCCUgGCUGGAUg -3'
miRNA:   3'- gCUgGACGACGu--GC--GGAgCGACCUGg -5'
20384 3' -59.2 NC_004687.1 + 121225 0.66 0.801371
Target:  5'- cCGAUCUGggacGCGCaGCuCUCGCUGGGuCUg -3'
miRNA:   3'- -GCUGGACga--CGUG-CG-GAGCGACCU-GG- -5'
20384 3' -59.2 NC_004687.1 + 50688 0.66 0.801371
Target:  5'- uCGGcCCUGUUcCACGCucCUCGuCUGGGCg -3'
miRNA:   3'- -GCU-GGACGAcGUGCG--GAGC-GACCUGg -5'
20384 3' -59.2 NC_004687.1 + 87713 0.66 0.801371
Target:  5'- gGAcuCCUaCUaccGCugGCCgaugUCGCUGGGCCc -3'
miRNA:   3'- gCU--GGAcGA---CGugCGG----AGCGACCUGG- -5'
20384 3' -59.2 NC_004687.1 + 41112 0.66 0.801371
Target:  5'- -aGCCguaacGCucgUGCAgCGCCUUguaGCUGGACCc -3'
miRNA:   3'- gcUGGa----CG---ACGU-GCGGAG---CGACCUGG- -5'
20384 3' -59.2 NC_004687.1 + 67323 0.66 0.801371
Target:  5'- uGACgCUGC-GCACGCCguugCGCgagacgaaGGugCc -3'
miRNA:   3'- gCUG-GACGaCGUGCGGa---GCGa-------CCugG- -5'
20384 3' -59.2 NC_004687.1 + 4277 0.66 0.800499
Target:  5'- gCGGCgUGUgcaGCAUuuugagcgccuugGCCUC-CUGGGCCa -3'
miRNA:   3'- -GCUGgACGa--CGUG-------------CGGAGcGACCUGG- -5'
20384 3' -59.2 NC_004687.1 + 19183 0.66 0.799626
Target:  5'- aCGGCCUGCgcgagauucucgGCGCGCUUCuGUc-GACCc -3'
miRNA:   3'- -GCUGGACGa-----------CGUGCGGAG-CGacCUGG- -5'
20384 3' -59.2 NC_004687.1 + 74735 0.66 0.79612
Target:  5'- cCGACCUGCUggaagccaugaagcgGCucucCGCCgacgGCgGGGCCu -3'
miRNA:   3'- -GCUGGACGA---------------CGu---GCGGag--CGaCCUGG- -5'
20384 3' -59.2 NC_004687.1 + 82889 0.66 0.792591
Target:  5'- aCGGCCaGCUGUGCGUaCUCGCgcu-CCa -3'
miRNA:   3'- -GCUGGaCGACGUGCG-GAGCGaccuGG- -5'
20384 3' -59.2 NC_004687.1 + 18821 0.66 0.792591
Target:  5'- uCGACCgGCaGCuCGCgaucgCGCUGGGCg -3'
miRNA:   3'- -GCUGGaCGaCGuGCGga---GCGACCUGg -5'
20384 3' -59.2 NC_004687.1 + 99649 0.66 0.792591
Target:  5'- -cGCCUGCUcGaCACGCa--GgaGGACCg -3'
miRNA:   3'- gcUGGACGA-C-GUGCGgagCgaCCUGG- -5'
20384 3' -59.2 NC_004687.1 + 132906 0.66 0.792591
Target:  5'- gCGAC--GCUGCGCGCCcUGC-GuGACCu -3'
miRNA:   3'- -GCUGgaCGACGUGCGGaGCGaC-CUGG- -5'
20384 3' -59.2 NC_004687.1 + 108207 0.66 0.792591
Target:  5'- uCGGCgaGCgccUGCGgGCCcUGgUGGACCg -3'
miRNA:   3'- -GCUGgaCG---ACGUgCGGaGCgACCUGG- -5'
20384 3' -59.2 NC_004687.1 + 77455 0.66 0.792591
Target:  5'- gGACCUGCgGUACaaccaGCUcuUCGagcggaUGGACCg -3'
miRNA:   3'- gCUGGACGaCGUG-----CGG--AGCg-----ACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.