miRNA display CGI


Results 1 - 20 of 333 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20385 5' -60.3 NC_004687.1 + 70604 0.66 0.738229
Target:  5'- cGCCC-CCGAGCUCAacCGCgAGGuCGUu -3'
miRNA:   3'- aCGGGuGGCUCGGGUc-GCGaUUC-GCG- -5'
20385 5' -60.3 NC_004687.1 + 29226 0.66 0.738229
Target:  5'- cUGUCCGCCGAGCUgcugaAGC-UUGAGCa- -3'
miRNA:   3'- -ACGGGUGGCUCGGg----UCGcGAUUCGcg -5'
20385 5' -60.3 NC_004687.1 + 134759 0.66 0.738229
Target:  5'- cGCCUcCUGGGuCCCAGUGgUGA-CGCu -3'
miRNA:   3'- aCGGGuGGCUC-GGGUCGCgAUUcGCG- -5'
20385 5' -60.3 NC_004687.1 + 111452 0.66 0.738229
Target:  5'- gGuCCCGCCGAcaCCCAGCcagucGCUGaucgaGGUGCc -3'
miRNA:   3'- aC-GGGUGGCUc-GGGUCG-----CGAU-----UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 117920 0.66 0.738229
Target:  5'- -uUCCugCGugaguGCCguCAGCGC-AAGCGCg -3'
miRNA:   3'- acGGGugGCu----CGG--GUCGCGaUUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 133897 0.66 0.738229
Target:  5'- cGCCagaGCUGcaGGCCCGGaCGCggcGGCGg -3'
miRNA:   3'- aCGGg--UGGC--UCGGGUC-GCGau-UCGCg -5'
20385 5' -60.3 NC_004687.1 + 80514 0.66 0.738229
Target:  5'- cGCCCgggcggcggcuGCCGcG-CCGGUGCaGAGCGUg -3'
miRNA:   3'- aCGGG-----------UGGCuCgGGUCGCGaUUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 30741 0.66 0.738229
Target:  5'- aGUgCCGuuGGGCUCGGCGUacaccccgaGAGCGCu -3'
miRNA:   3'- aCG-GGUggCUCGGGUCGCGa--------UUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 49518 0.66 0.738229
Target:  5'- gGCUCAgcuCCaGGCUCAGCGCc-AGCGUc -3'
miRNA:   3'- aCGGGU---GGcUCGGGUCGCGauUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 97656 0.66 0.738229
Target:  5'- gUGCuCCAgCGAGCCggugucggCAGCGU---GCGCc -3'
miRNA:   3'- -ACG-GGUgGCUCGG--------GUCGCGauuCGCG- -5'
20385 5' -60.3 NC_004687.1 + 74154 0.66 0.736318
Target:  5'- -cCCCGCCGAGCcgcacCCGGaCGCcccgccguggcAGCGCg -3'
miRNA:   3'- acGGGUGGCUCG-----GGUC-GCGau---------UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 69290 0.66 0.732484
Target:  5'- cGCuCCACCGgcAGCCggUAGCGCUcguuGucggcgaugccgcccAGCGCg -3'
miRNA:   3'- aCG-GGUGGC--UCGG--GUCGCGA----U---------------UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 139473 0.66 0.728637
Target:  5'- gGCaagGCCGAcGCaUCGGCGCUGAGCucGCu -3'
miRNA:   3'- aCGgg-UGGCU-CG-GGUCGCGAUUCG--CG- -5'
20385 5' -60.3 NC_004687.1 + 40438 0.66 0.728637
Target:  5'- --aCCACUGGGUCCGGCGCgagaccgAGGuUGUa -3'
miRNA:   3'- acgGGUGGCUCGGGUCGCGa------UUC-GCG- -5'
20385 5' -60.3 NC_004687.1 + 84113 0.66 0.728637
Target:  5'- gGCCCugCGAgaucaGCCCGGCcagGCcggGAG-GCa -3'
miRNA:   3'- aCGGGugGCU-----CGGGUCG---CGa--UUCgCG- -5'
20385 5' -60.3 NC_004687.1 + 26387 0.66 0.728637
Target:  5'- gGCCCgcGCCGuGaCCCGGC-CUGGcCGCu -3'
miRNA:   3'- aCGGG--UGGCuC-GGGUCGcGAUUcGCG- -5'
20385 5' -60.3 NC_004687.1 + 141130 0.66 0.728637
Target:  5'- gGCUCagGCUG-GCUCAGCGUgGGGUGCc -3'
miRNA:   3'- aCGGG--UGGCuCGGGUCGCGaUUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 879 0.66 0.728637
Target:  5'- -aUCCGCUGGGCCaGGUGCU--GCGUg -3'
miRNA:   3'- acGGGUGGCUCGGgUCGCGAuuCGCG- -5'
20385 5' -60.3 NC_004687.1 + 134309 0.66 0.728637
Target:  5'- cGCCaguaCACCGAGUCCGGCuacGAGCa- -3'
miRNA:   3'- aCGG----GUGGCUCGGGUCGcgaUUCGcg -5'
20385 5' -60.3 NC_004687.1 + 114416 0.66 0.728637
Target:  5'- gGCCaggACUGGGUCCAGCuCUAcGGCGg -3'
miRNA:   3'- aCGGg--UGGCUCGGGUCGcGAU-UCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.