miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20385 5' -60.3 NC_004687.1 + 879 0.66 0.728637
Target:  5'- -aUCCGCUGGGCCaGGUGCU--GCGUg -3'
miRNA:   3'- acGGGUGGCUCGGgUCGCGAuuCGCG- -5'
20385 5' -60.3 NC_004687.1 + 2615 0.67 0.619705
Target:  5'- gGCCgACC-AGCgCCAGCGUcuugGAcGCGCu -3'
miRNA:   3'- aCGGgUGGcUCG-GGUCGCGa---UU-CGCG- -5'
20385 5' -60.3 NC_004687.1 + 2785 0.69 0.502123
Target:  5'- cUGCCgCACCGcGCCCGGCgGCgacGGCu- -3'
miRNA:   3'- -ACGG-GUGGCuCGGGUCG-CGau-UCGcg -5'
20385 5' -60.3 NC_004687.1 + 2898 0.69 0.521176
Target:  5'- aUGCCCACCGucGCC--GCGacuGGCGCc -3'
miRNA:   3'- -ACGGGUGGCu-CGGguCGCgauUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 3555 0.66 0.718964
Target:  5'- gGCCCugCuGGUCUucGGCGUgcuGGUGCa -3'
miRNA:   3'- aCGGGugGcUCGGG--UCGCGau-UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 3804 0.68 0.560066
Target:  5'- cUGCuCUACUG-GCUCaAGCGCUgaaaacaccGAGCGCg -3'
miRNA:   3'- -ACG-GGUGGCuCGGG-UCGCGA---------UUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 4901 0.66 0.679647
Target:  5'- aGCUCACCGAGgUCGG-GCUGGaggccGUGCu -3'
miRNA:   3'- aCGGGUGGCUCgGGUCgCGAUU-----CGCG- -5'
20385 5' -60.3 NC_004687.1 + 4994 0.67 0.649737
Target:  5'- gGCCCACCaGGCCCAG-GUUGucaaGGagaGCc -3'
miRNA:   3'- aCGGGUGGcUCGGGUCgCGAU----UCg--CG- -5'
20385 5' -60.3 NC_004687.1 + 5170 0.67 0.619705
Target:  5'- aGCgCGCCGAGCgauCCGcGCGCaAGGCuGCc -3'
miRNA:   3'- aCGgGUGGCUCG---GGU-CGCGaUUCG-CG- -5'
20385 5' -60.3 NC_004687.1 + 6009 0.68 0.560066
Target:  5'- cGgCUGCCGAGgCC-GCGCUGcgcaucgacaaGGCGCu -3'
miRNA:   3'- aCgGGUGGCUCgGGuCGCGAU-----------UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 6469 0.66 0.679647
Target:  5'- uUGCCCAgCGGGUCCAuGCuGUUGAacuGaCGCg -3'
miRNA:   3'- -ACGGGUgGCUCGGGU-CG-CGAUU---C-GCG- -5'
20385 5' -60.3 NC_004687.1 + 6617 0.66 0.708242
Target:  5'- cGgCgACCGcgaucgaGGCCUuGCGCUuAGCGCu -3'
miRNA:   3'- aCgGgUGGC-------UCGGGuCGCGAuUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 6989 0.66 0.689553
Target:  5'- cGCCCGcguguCCG-GCCCGGCG----GCGCc -3'
miRNA:   3'- aCGGGU-----GGCuCGGGUCGCgauuCGCG- -5'
20385 5' -60.3 NC_004687.1 + 7036 0.71 0.403663
Target:  5'- cGCCCgGCUGAGCUUguuGCGCUccagaguGGCGCg -3'
miRNA:   3'- aCGGG-UGGCUCGGGu--CGCGAu------UCGCG- -5'
20385 5' -60.3 NC_004687.1 + 7081 0.72 0.363118
Target:  5'- gGCCCGCUcGGCCUuGCGCUccucacGCGCg -3'
miRNA:   3'- aCGGGUGGcUCGGGuCGCGAuu----CGCG- -5'
20385 5' -60.3 NC_004687.1 + 7211 0.72 0.363118
Target:  5'- cGCCCACUcuuGAGCCCGGCG----GCGUu -3'
miRNA:   3'- aCGGGUGG---CUCGGGUCGCgauuCGCG- -5'
20385 5' -60.3 NC_004687.1 + 7310 0.71 0.403663
Target:  5'- cGCUCGCUGGGCgCUgaAGUGCUccGAGCGUg -3'
miRNA:   3'- aCGGGUGGCUCG-GG--UCGCGA--UUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 7761 0.66 0.718964
Target:  5'- cUGCCCAgCGAggaguuccagGCCaCGGUGCgcaaccGGGUGCu -3'
miRNA:   3'- -ACGGGUgGCU----------CGG-GUCGCGa-----UUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 8382 0.67 0.649737
Target:  5'- gGCCCGCUGcuGCaCCugcugaacacguGGCGCgcgcggaugGAGCGCg -3'
miRNA:   3'- aCGGGUGGCu-CG-GG------------UCGCGa--------UUCGCG- -5'
20385 5' -60.3 NC_004687.1 + 8769 0.68 0.613702
Target:  5'- cUGCCa--CGAGCCCAG-GCUGuacagguaggcgauGCGCu -3'
miRNA:   3'- -ACGGgugGCUCGGGUCgCGAUu-------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.