miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20386 3' -56.9 NC_004687.1 + 68169 0.66 0.904872
Target:  5'- aCUGGGgcaaCGgacCGGAGAUcaCCCaCGAGCg -3'
miRNA:   3'- aGACCUa---GCga-GCCUCUA--GGG-GCUCG- -5'
20386 3' -56.9 NC_004687.1 + 2301 0.66 0.904872
Target:  5'- uUCUGcg-CGUUCGuuGGUUCCCGAGUu -3'
miRNA:   3'- -AGACcuaGCGAGCcuCUAGGGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 117504 0.66 0.904872
Target:  5'- gUCcGGAagcugCGCagcaggugCGGGGcgCCCCGGGUg -3'
miRNA:   3'- -AGaCCUa----GCGa-------GCCUCuaGGGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 75005 0.66 0.904872
Target:  5'- -----cUCGaCUCGGGcGGUCaCCCGGGCg -3'
miRNA:   3'- agaccuAGC-GAGCCU-CUAG-GGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 96443 0.66 0.904872
Target:  5'- --gGGAggGCUgGGAGGUCUCCccuGCg -3'
miRNA:   3'- agaCCUagCGAgCCUCUAGGGGcu-CG- -5'
20386 3' -56.9 NC_004687.1 + 5027 0.66 0.903024
Target:  5'- uUCUGGGaguagugCgGCUUGGAGAUCcgauaguggguaggCCUGAGUg -3'
miRNA:   3'- -AGACCUa------G-CGAGCCUCUAG--------------GGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 125152 0.66 0.898633
Target:  5'- cCUGGGcgaugCGCuugUCGGuGGUCCaaugucguCCGAGCu -3'
miRNA:   3'- aGACCUa----GCG---AGCCuCUAGG--------GGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 144409 0.66 0.890188
Target:  5'- aCUGGcgCggcgaccccgucugGCUCaaGGAGGUCCUCGaAGCc -3'
miRNA:   3'- aGACCuaG--------------CGAG--CCUCUAGGGGC-UCG- -5'
20386 3' -56.9 NC_004687.1 + 18584 0.66 0.888186
Target:  5'- --cGGAUgGCUCGcGAGcagcgcgagcgguucGUCCCCGAc- -3'
miRNA:   3'- agaCCUAgCGAGC-CUC---------------UAGGGGCUcg -5'
20386 3' -56.9 NC_004687.1 + 78593 0.66 0.885487
Target:  5'- uUCUGac-CGC-CGGGGcgCCCgGAGCc -3'
miRNA:   3'- -AGACcuaGCGaGCCUCuaGGGgCUCG- -5'
20386 3' -56.9 NC_004687.1 + 137142 0.66 0.878587
Target:  5'- cCUGGGcUCGUcugCgGGAGAUCCCgGuGGCc -3'
miRNA:   3'- aGACCU-AGCGa--G-CCUCUAGGGgC-UCG- -5'
20386 3' -56.9 NC_004687.1 + 76245 0.66 0.871474
Target:  5'- gUCUGGAUCGaC-CGGcGAU-UCCGAGUc -3'
miRNA:   3'- -AGACCUAGC-GaGCCuCUAgGGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 131345 0.66 0.871474
Target:  5'- --cGGAUUcacCUCGGGcggguGGUCCUCGGGCg -3'
miRNA:   3'- agaCCUAGc--GAGCCU-----CUAGGGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 124729 0.67 0.864153
Target:  5'- aUCUGGuugccgUGCUCcuGGAGAccUUCuuGAGCa -3'
miRNA:   3'- -AGACCua----GCGAG--CCUCU--AGGggCUCG- -5'
20386 3' -56.9 NC_004687.1 + 58016 0.67 0.864153
Target:  5'- --cGGGUCaGCUCGuAG-UCCCCG-GCg -3'
miRNA:   3'- agaCCUAG-CGAGCcUCuAGGGGCuCG- -5'
20386 3' -56.9 NC_004687.1 + 55623 0.67 0.855867
Target:  5'- gUUUGGcguAUCGgUCGGuGAUCCCCaggacagGAGUu -3'
miRNA:   3'- -AGACC---UAGCgAGCCuCUAGGGG-------CUCG- -5'
20386 3' -56.9 NC_004687.1 + 106585 0.67 0.84891
Target:  5'- cCUGG-UCGUUaCGGcucuGGUCgCCCGAGUc -3'
miRNA:   3'- aGACCuAGCGA-GCCu---CUAG-GGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 119969 0.67 0.846557
Target:  5'- uUCggcaGGUCGUugaucuucauguugUCGGAGAUCUCCG-GCg -3'
miRNA:   3'- -AGac--CUAGCG--------------AGCCUCUAGGGGCuCG- -5'
20386 3' -56.9 NC_004687.1 + 72382 0.67 0.832907
Target:  5'- -aUGGGUCGggcaCGGAuacGUCCCUGGGCa -3'
miRNA:   3'- agACCUAGCga--GCCUc--UAGGGGCUCG- -5'
20386 3' -56.9 NC_004687.1 + 154912 0.67 0.832907
Target:  5'- gCUGGAUCGCUUGGGcaccaucgcaccGGUggUCgCGGGCu -3'
miRNA:   3'- aGACCUAGCGAGCCU------------CUA--GGgGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.