miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20386 5' -59 NC_004687.1 + 69937 0.66 0.778471
Target:  5'- -cGCUggccaagaaGGGCAUcaagaccgacaCCAUCCGGGuggucaaucccaacuCCGGCCa -3'
miRNA:   3'- uaCGA---------CCCGUA-----------GGUAGGCUC---------------GGUCGG- -5'
20386 5' -59 NC_004687.1 + 97364 0.66 0.774766
Target:  5'- gGUGUUGGGCGgacCCGgaagcUCCGGG-UGGCCc -3'
miRNA:   3'- -UACGACCCGUa--GGU-----AGGCUCgGUCGG- -5'
20386 5' -59 NC_004687.1 + 35165 0.66 0.774766
Target:  5'- cUGCUGGaCAccgCCGUCC-AGUCGGUCa -3'
miRNA:   3'- uACGACCcGUa--GGUAGGcUCGGUCGG- -5'
20386 5' -59 NC_004687.1 + 74357 0.66 0.774766
Target:  5'- -gGCUGGGCA-CCGUggCCaaggguGCCGGUCu -3'
miRNA:   3'- uaCGACCCGUaGGUA--GGcu----CGGUCGG- -5'
20386 5' -59 NC_004687.1 + 140245 0.66 0.774766
Target:  5'- -gGC-GGucGCAUCCAcCuCGGGCCAGCa -3'
miRNA:   3'- uaCGaCC--CGUAGGUaG-GCUCGGUCGg -5'
20386 5' -59 NC_004687.1 + 130998 0.66 0.774766
Target:  5'- gGUGCcaccGGGCGUgCCAUCguCGAG-CAGCUg -3'
miRNA:   3'- -UACGa---CCCGUA-GGUAG--GCUCgGUCGG- -5'
20386 5' -59 NC_004687.1 + 151336 0.66 0.765418
Target:  5'- cUGCUGuGCAUCCcgaCCGugucccgcacGGCCAGCa -3'
miRNA:   3'- uACGACcCGUAGGua-GGC----------UCGGUCGg -5'
20386 5' -59 NC_004687.1 + 89803 0.66 0.765418
Target:  5'- -cGCUGGGcCGUCCA-CUGcGGCCGauGUCg -3'
miRNA:   3'- uaCGACCC-GUAGGUaGGC-UCGGU--CGG- -5'
20386 5' -59 NC_004687.1 + 80839 0.66 0.765418
Target:  5'- -gGUUGGGCAUgC--CUGAGaCCAGUCg -3'
miRNA:   3'- uaCGACCCGUAgGuaGGCUC-GGUCGG- -5'
20386 5' -59 NC_004687.1 + 864 0.66 0.755952
Target:  5'- -aGCUGcGCuacGUCCAUCCGcugGGCCAGgUg -3'
miRNA:   3'- uaCGACcCG---UAGGUAGGC---UCGGUCgG- -5'
20386 5' -59 NC_004687.1 + 119587 0.66 0.755952
Target:  5'- gGUGCUGGGUGUCg--CCGAucGCgUAGCUg -3'
miRNA:   3'- -UACGACCCGUAGguaGGCU--CG-GUCGG- -5'
20386 5' -59 NC_004687.1 + 46568 0.66 0.755952
Target:  5'- -cGCgGGGCAauuuUCUuggccugCCGGGCUAGCUc -3'
miRNA:   3'- uaCGaCCCGU----AGGua-----GGCUCGGUCGG- -5'
20386 5' -59 NC_004687.1 + 10737 0.66 0.74734
Target:  5'- cGUGCUGGGCugcuggCCGggcaccaacgucgugCCGAccgucCCGGCCa -3'
miRNA:   3'- -UACGACCCGua----GGUa--------------GGCUc----GGUCGG- -5'
20386 5' -59 NC_004687.1 + 143476 0.66 0.746378
Target:  5'- gGUGCgGGGCAUCaGUCCu--CCAGCg -3'
miRNA:   3'- -UACGaCCCGUAGgUAGGcucGGUCGg -5'
20386 5' -59 NC_004687.1 + 85201 0.66 0.746378
Target:  5'- -cGCUGGaCcUCCG-CCGGGCCcgagaAGCCu -3'
miRNA:   3'- uaCGACCcGuAGGUaGGCUCGG-----UCGG- -5'
20386 5' -59 NC_004687.1 + 36468 0.66 0.746378
Target:  5'- -gGCUGGGCGUagaugacccggUCGUCCcaGAGCUcuucGCCg -3'
miRNA:   3'- uaCGACCCGUA-----------GGUAGG--CUCGGu---CGG- -5'
20386 5' -59 NC_004687.1 + 125256 0.66 0.746378
Target:  5'- aAUGCgGGGCcuagAUCgGggUGAGCCAGCUu -3'
miRNA:   3'- -UACGaCCCG----UAGgUagGCUCGGUCGG- -5'
20386 5' -59 NC_004687.1 + 1222 0.66 0.745415
Target:  5'- cUGCUGGaGCAcgagaucgagcauUCCAcgcugcCCGAGC-AGCCg -3'
miRNA:   3'- uACGACC-CGU-------------AGGUa-----GGCUCGgUCGG- -5'
20386 5' -59 NC_004687.1 + 78748 0.66 0.736705
Target:  5'- uAUGuCUGGGgugCCAccggUCCG-GCCAGCUa -3'
miRNA:   3'- -UAC-GACCCguaGGU----AGGCuCGGUCGG- -5'
20386 5' -59 NC_004687.1 + 35316 0.66 0.736705
Target:  5'- -cGCccgaGGGCA-CCGU-CGAuGCCAGCCc -3'
miRNA:   3'- uaCGa---CCCGUaGGUAgGCU-CGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.