miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20387 3' -57.4 NC_004687.1 + 127471 0.66 0.862336
Target:  5'- aCGACCUuGUCGGCGgacaCCAGGcgGCGa- -3'
miRNA:   3'- -GUUGGAcCAGUCGUg---GGUCCa-CGCac -5'
20387 3' -57.4 NC_004687.1 + 143138 0.66 0.854661
Target:  5'- aCAGCUUGuccUCGccacGCugCCAGGUGCGg- -3'
miRNA:   3'- -GUUGGACc--AGU----CGugGGUCCACGCac -5'
20387 3' -57.4 NC_004687.1 + 6167 0.66 0.854661
Target:  5'- cCAugCgGGagAGCAUCUGGG-GCGUGg -3'
miRNA:   3'- -GUugGaCCagUCGUGGGUCCaCGCAC- -5'
20387 3' -57.4 NC_004687.1 + 40284 0.66 0.854661
Target:  5'- cCAGCgaGGaCAGCGCCCacAGGuUGCGc- -3'
miRNA:   3'- -GUUGgaCCaGUCGUGGG--UCC-ACGCac -5'
20387 3' -57.4 NC_004687.1 + 90464 0.66 0.853882
Target:  5'- --uCCUGGUCGGUgugcucgaugucgGCCCAGGcGC-UGa -3'
miRNA:   3'- guuGGACCAGUCG-------------UGGGUCCaCGcAC- -5'
20387 3' -57.4 NC_004687.1 + 91530 0.66 0.846786
Target:  5'- uGACCUGGUCGuaGCuCUGGGUGUa-- -3'
miRNA:   3'- gUUGGACCAGUcgUG-GGUCCACGcac -5'
20387 3' -57.4 NC_004687.1 + 35697 0.66 0.838717
Target:  5'- uGACCUcGGccuccCAGUAguCCCAGGUGCGc- -3'
miRNA:   3'- gUUGGA-CCa----GUCGU--GGGUCCACGCac -5'
20387 3' -57.4 NC_004687.1 + 97103 0.66 0.838717
Target:  5'- uGACC-GG-CAcCGCCCAGGUGUGg- -3'
miRNA:   3'- gUUGGaCCaGUcGUGGGUCCACGCac -5'
20387 3' -57.4 NC_004687.1 + 79825 0.66 0.830462
Target:  5'- aCAACCUgcaGGUCuAGuCACCgAGGUG-GUGc -3'
miRNA:   3'- -GUUGGA---CCAG-UC-GUGGgUCCACgCAC- -5'
20387 3' -57.4 NC_004687.1 + 1105 0.66 0.827109
Target:  5'- -uGCUUGGUCcgGGCGCCCGGGccgaucuggacagGCGg- -3'
miRNA:   3'- guUGGACCAG--UCGUGGGUCCa------------CGCac -5'
20387 3' -57.4 NC_004687.1 + 21077 0.67 0.81342
Target:  5'- -cGCgCUGGUCAgccccGCACCgAGGaaaaGCGUGa -3'
miRNA:   3'- guUG-GACCAGU-----CGUGGgUCCa---CGCAC- -5'
20387 3' -57.4 NC_004687.1 + 116658 0.67 0.80465
Target:  5'- gGGCCUGGUCaagcAGUACCUGGGcaaGCGc- -3'
miRNA:   3'- gUUGGACCAG----UCGUGGGUCCa--CGCac -5'
20387 3' -57.4 NC_004687.1 + 120916 0.67 0.80465
Target:  5'- uCAcCCUGGUCGGCagacucagcgGCCCcGGUGgGg- -3'
miRNA:   3'- -GUuGGACCAGUCG----------UGGGuCCACgCac -5'
20387 3' -57.4 NC_004687.1 + 105364 0.67 0.795725
Target:  5'- aGAUCcgGGUCcagaaAGCcuGCCCAGG-GCGUGg -3'
miRNA:   3'- gUUGGa-CCAG-----UCG--UGGGUCCaCGCAC- -5'
20387 3' -57.4 NC_004687.1 + 124675 0.67 0.795725
Target:  5'- --cCCUcGGUCAGCACgCCguGGGUGuCGUc -3'
miRNA:   3'- guuGGA-CCAGUCGUG-GG--UCCAC-GCAc -5'
20387 3' -57.4 NC_004687.1 + 148734 0.67 0.777442
Target:  5'- uCAGCCUGGauugCGGCACCgAuG-GCGUGc -3'
miRNA:   3'- -GUUGGACCa---GUCGUGGgUcCaCGCAC- -5'
20387 3' -57.4 NC_004687.1 + 74506 0.67 0.768103
Target:  5'- cCGACCgGGgCAGUGCCCAGGaucgagGUGUa -3'
miRNA:   3'- -GUUGGaCCaGUCGUGGGUCCa-----CGCAc -5'
20387 3' -57.4 NC_004687.1 + 121529 0.68 0.758643
Target:  5'- aGGCCUGG-CAGCAcCCCAGGgGUc-- -3'
miRNA:   3'- gUUGGACCaGUCGU-GGGUCCaCGcac -5'
20387 3' -57.4 NC_004687.1 + 105218 0.68 0.758643
Target:  5'- aGACCUcGGUCA-CGCCCagacgAGGaGCGUGg -3'
miRNA:   3'- gUUGGA-CCAGUcGUGGG-----UCCaCGCAC- -5'
20387 3' -57.4 NC_004687.1 + 21873 0.68 0.758643
Target:  5'- -cGCaCUGGUgCAGCaugccgACCCGGuuGUGCGUGg -3'
miRNA:   3'- guUG-GACCA-GUCG------UGGGUC--CACGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.