miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20387 5' -57.1 NC_004687.1 + 90089 0.66 0.891015
Target:  5'- gCGCGUGCuuCGUuuccgccGUGCGGCugGGGCUg -3'
miRNA:   3'- -GCGCACGcuGCGua-----CACGCUG--CUCGA- -5'
20387 5' -57.1 NC_004687.1 + 55699 0.66 0.89035
Target:  5'- -cCGUGCGACGCAuucaugaUGUuuGgGACGAGg- -3'
miRNA:   3'- gcGCACGCUGCGU-------ACA--CgCUGCUCga -5'
20387 5' -57.1 NC_004687.1 + 93227 0.66 0.88426
Target:  5'- uGCGuUGCGcugguACGCAgc--CGACGAGCUg -3'
miRNA:   3'- gCGC-ACGC-----UGCGUacacGCUGCUCGA- -5'
20387 5' -57.1 NC_004687.1 + 63265 0.66 0.877286
Target:  5'- gCGCG-GUGGCGUcgGUGUaGGCGAccGCg -3'
miRNA:   3'- -GCGCaCGCUGCGuaCACG-CUGCU--CGa -5'
20387 5' -57.1 NC_004687.1 + 36271 0.66 0.870099
Target:  5'- -uCGUGCGGCGCcgGUauugaGaCGcCGAGCUa -3'
miRNA:   3'- gcGCACGCUGCGuaCA-----C-GCuGCUCGA- -5'
20387 5' -57.1 NC_004687.1 + 109627 0.66 0.870099
Target:  5'- cCGC-UGCGcgaGCGCAU-UGaCGGCGGGCUg -3'
miRNA:   3'- -GCGcACGC---UGCGUAcAC-GCUGCUCGA- -5'
20387 5' -57.1 NC_004687.1 + 44289 0.66 0.869368
Target:  5'- gCGCGUcgaggacauccGCGACGC-UGUcgacaccGCGcGCGAGCa -3'
miRNA:   3'- -GCGCA-----------CGCUGCGuACA-------CGC-UGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 72853 0.66 0.862702
Target:  5'- cCGCGUGCGuaccagguCGCuGUGUGCGccgccgguauccGCGAGa- -3'
miRNA:   3'- -GCGCACGCu-------GCG-UACACGC------------UGCUCga -5'
20387 5' -57.1 NC_004687.1 + 25453 0.66 0.862702
Target:  5'- uGCGUGCGACcugcgGCAgc-GCGGCcAGCg -3'
miRNA:   3'- gCGCACGCUG-----CGUacaCGCUGcUCGa -5'
20387 5' -57.1 NC_004687.1 + 152564 0.67 0.831147
Target:  5'- uCGCGggcaagGUGAUGCGcgagGUggugaucaGCGACGAGCa -3'
miRNA:   3'- -GCGCa-----CGCUGCGUa---CA--------CGCUGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 79092 0.67 0.81428
Target:  5'- aGCGgcgGCGGCGCg---GCGcCGGGCa -3'
miRNA:   3'- gCGCa--CGCUGCGuacaCGCuGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 25777 0.67 0.8056
Target:  5'- uGCGUggcuGCGACuGCGgaGUGCGACGuGUg -3'
miRNA:   3'- gCGCA----CGCUG-CGUa-CACGCUGCuCGa -5'
20387 5' -57.1 NC_004687.1 + 27638 0.67 0.8056
Target:  5'- cCGCGUccuUGAUGC-UGgccGCGACGAGCa -3'
miRNA:   3'- -GCGCAc--GCUGCGuACa--CGCUGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 45074 0.67 0.8056
Target:  5'- gGCa-GCGACGCcgG-GCGGCgGAGCa -3'
miRNA:   3'- gCGcaCGCUGCGuaCaCGCUG-CUCGa -5'
20387 5' -57.1 NC_004687.1 + 114567 0.68 0.796767
Target:  5'- uGCGUGCGaccucGCGCAcgaUGcccGCGuCGAGCa -3'
miRNA:   3'- gCGCACGC-----UGCGU---ACa--CGCuGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 153533 0.68 0.782335
Target:  5'- gCGCGUGCaauGGCGCAUGaccuguuggaucugGCGGCGcuGGCc -3'
miRNA:   3'- -GCGCACG---CUGCGUACa-------------CGCUGC--UCGa -5'
20387 5' -57.1 NC_004687.1 + 85570 0.68 0.769429
Target:  5'- -uCGU-CGACGCGcUGUGCGGCGAcGCc -3'
miRNA:   3'- gcGCAcGCUGCGU-ACACGCUGCU-CGa -5'
20387 5' -57.1 NC_004687.1 + 5358 0.68 0.760065
Target:  5'- gGUGUGCGAuCGCAuacUGUG-GGCGAGa- -3'
miRNA:   3'- gCGCACGCU-GCGU---ACACgCUGCUCga -5'
20387 5' -57.1 NC_004687.1 + 144925 0.69 0.75059
Target:  5'- cCGCGccGaCGugGCccGUGUGAUGGGCg -3'
miRNA:   3'- -GCGCa-C-GCugCGuaCACGCUGCUCGa -5'
20387 5' -57.1 NC_004687.1 + 4726 0.69 0.741014
Target:  5'- uCGCGUucggcaucgGCGugGUcUGUGCGGCGcuGGCc -3'
miRNA:   3'- -GCGCA---------CGCugCGuACACGCUGC--UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.