miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20388 3' -62.6 NC_004687.1 + 9933 0.66 0.625
Target:  5'- ---gGCGgUUGUcCGGGCCUGCCGGGc -3'
miRNA:   3'- cucaUGCgGGCA-GCCCGGGCGGUCUa -5'
20388 3' -62.6 NC_004687.1 + 121738 0.66 0.625
Target:  5'- ---aGCGCCCGUCcGGCaCGCCAaGAc -3'
miRNA:   3'- cucaUGCGGGCAGcCCGgGCGGU-CUa -5'
20388 3' -62.6 NC_004687.1 + 102777 0.66 0.625
Target:  5'- cGAGgaucuUGgCCGUCGcGGCCCgGCCAGc- -3'
miRNA:   3'- -CUCau---GCgGGCAGC-CCGGG-CGGUCua -5'
20388 3' -62.6 NC_004687.1 + 116495 0.66 0.625
Target:  5'- -uGUGCgGCCCGggcCGuGGCuCCGCCGGu- -3'
miRNA:   3'- cuCAUG-CGGGCa--GC-CCG-GGCGGUCua -5'
20388 3' -62.6 NC_004687.1 + 104222 0.66 0.615157
Target:  5'- cGGUACuCCUG-CGGGUUCGCCAGc- -3'
miRNA:   3'- cUCAUGcGGGCaGCCCGGGCGGUCua -5'
20388 3' -62.6 NC_004687.1 + 77878 0.66 0.605325
Target:  5'- ---cACGCCCaGUCccuGGGCCacgGCCAGGUc -3'
miRNA:   3'- cucaUGCGGG-CAG---CCCGGg--CGGUCUA- -5'
20388 3' -62.6 NC_004687.1 + 120162 0.66 0.605325
Target:  5'- cAGUGCGUCCGgggugCGGGUagaccUCGCCGGu- -3'
miRNA:   3'- cUCAUGCGGGCa----GCCCG-----GGCGGUCua -5'
20388 3' -62.6 NC_004687.1 + 3427 0.66 0.595511
Target:  5'- -uGUugGCCUuggccgagGUCuGGCCCGaCCGGAUc -3'
miRNA:   3'- cuCAugCGGG--------CAGcCCGGGC-GGUCUA- -5'
20388 3' -62.6 NC_004687.1 + 63392 0.66 0.595511
Target:  5'- -uGUACGCCCGacCGGGCaugaCGCacCAGGUc -3'
miRNA:   3'- cuCAUGCGGGCa-GCCCGg---GCG--GUCUA- -5'
20388 3' -62.6 NC_004687.1 + 102663 0.66 0.585723
Target:  5'- -cGUugGUggugCCGgugCGGGCCCGCUccAGAg -3'
miRNA:   3'- cuCAugCG----GGCa--GCCCGGGCGG--UCUa -5'
20388 3' -62.6 NC_004687.1 + 32098 0.66 0.583768
Target:  5'- -cGUGCGCgCGgaagguggccaGGGCCCugGCCAGAUc -3'
miRNA:   3'- cuCAUGCGgGCag---------CCCGGG--CGGUCUA- -5'
20388 3' -62.6 NC_004687.1 + 15714 0.66 0.579864
Target:  5'- --cUGCGCaCCGUCGccgaggccaacggcuGGaCCCGCCGGGUu -3'
miRNA:   3'- cucAUGCG-GGCAGC---------------CC-GGGCGGUCUA- -5'
20388 3' -62.6 NC_004687.1 + 63940 0.67 0.566245
Target:  5'- uGAGUcagugaaggcgGgGCCCGagGGGgcCCCGCCGGGg -3'
miRNA:   3'- -CUCA-----------UgCGGGCagCCC--GGGCGGUCUa -5'
20388 3' -62.6 NC_004687.1 + 49335 0.67 0.566245
Target:  5'- -cGUACuuccaGCCCuccCGGGCCCGCCAu-- -3'
miRNA:   3'- cuCAUG-----CGGGca-GCCCGGGCGGUcua -5'
20388 3' -62.6 NC_004687.1 + 49269 0.67 0.556567
Target:  5'- uGGUGCGCuuGUCGaagaaGGCCUcuucggGCCGGAc -3'
miRNA:   3'- cUCAUGCGggCAGC-----CCGGG------CGGUCUa -5'
20388 3' -62.6 NC_004687.1 + 135301 0.67 0.546937
Target:  5'- ---cGCgGUCCGUCGGGUCgCGCUGGAUc -3'
miRNA:   3'- cucaUG-CGGGCAGCCCGG-GCGGUCUA- -5'
20388 3' -62.6 NC_004687.1 + 26944 0.67 0.546937
Target:  5'- cGGGUACuCCCGUCGGGUCaGUC-GAUg -3'
miRNA:   3'- -CUCAUGcGGGCAGCCCGGgCGGuCUA- -5'
20388 3' -62.6 NC_004687.1 + 78003 0.67 0.545977
Target:  5'- cGAGcugACGUCCGgccUGGGCucccacaCCGCCAGAg -3'
miRNA:   3'- -CUCa--UGCGGGCa--GCCCG-------GGCGGUCUa -5'
20388 3' -62.6 NC_004687.1 + 7421 0.67 0.527844
Target:  5'- ---cGCGCgCGUCaaGGCCUGCCAGGa -3'
miRNA:   3'- cucaUGCGgGCAGc-CCGGGCGGUCUa -5'
20388 3' -62.6 NC_004687.1 + 39636 0.68 0.49969
Target:  5'- -----gGCCCGUCGgcagacGGCCCGCUGGGUc -3'
miRNA:   3'- cucaugCGGGCAGC------CCGGGCGGUCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.