miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20388 5' -56.3 NC_004687.1 + 38837 0.66 0.918119
Target:  5'- aGaACGCUCuCAAGCGCcacauccggcgccggUGCGAGGuGGu -3'
miRNA:   3'- gC-UGCGGGuGUUCGCG---------------AUGCUCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 69226 0.66 0.915837
Target:  5'- -uGCGCCCugGgacgaggagcuGGCGacCUACGAGGAc- -3'
miRNA:   3'- gcUGCGGGugU-----------UCGC--GAUGCUCCUcu -5'
20388 5' -56.3 NC_004687.1 + 15886 0.66 0.915837
Target:  5'- uGGCGCCCA--AGCGCgccaagguucGCGAGGuucgcGAg -3'
miRNA:   3'- gCUGCGGGUguUCGCGa---------UGCUCCu----CU- -5'
20388 5' -56.3 NC_004687.1 + 59339 0.66 0.915837
Target:  5'- aCGGCGCUCgaugACAugcAGCGCUGgGuggacgcucacaAGGAGAg -3'
miRNA:   3'- -GCUGCGGG----UGU---UCGCGAUgC------------UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 41114 0.66 0.915837
Target:  5'- uGGCGCgagcaucaccgUCACAGGUcgggguggaGCUacaACGAGGAGAg -3'
miRNA:   3'- gCUGCG-----------GGUGUUCG---------CGA---UGCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 144478 0.66 0.915837
Target:  5'- aCGGCGCCUACAaccggggccacGGCGaCUuCGGcGAGAu -3'
miRNA:   3'- -GCUGCGGGUGU-----------UCGC-GAuGCUcCUCU- -5'
20388 5' -56.3 NC_004687.1 + 104351 0.66 0.915837
Target:  5'- cCGACGCCCGgcUGAGCcgaGCUguccacgacGCGguAGGAGAc -3'
miRNA:   3'- -GCUGCGGGU--GUUCG---CGA---------UGC--UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 26710 0.66 0.909965
Target:  5'- aCGACGCCgACAAGgccgacuacuuCGCU-CGGGGcGGc -3'
miRNA:   3'- -GCUGCGGgUGUUC-----------GCGAuGCUCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 149120 0.66 0.909965
Target:  5'- gGGCGCUCACc-GUGCcGCGAGGcAGc -3'
miRNA:   3'- gCUGCGGGUGuuCGCGaUGCUCC-UCu -5'
20388 5' -56.3 NC_004687.1 + 27070 0.66 0.909965
Target:  5'- cCGG-GCCCGCAGGCGa-GCGAucGGGGu -3'
miRNA:   3'- -GCUgCGGGUGUUCGCgaUGCU--CCUCu -5'
20388 5' -56.3 NC_004687.1 + 29904 0.66 0.909965
Target:  5'- uCGACGCCUACcgacGaCGCccUGAGGGGGa -3'
miRNA:   3'- -GCUGCGGGUGuu--C-GCGauGCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 149335 0.66 0.909366
Target:  5'- aCGugGCCCGC-AGCGgUcuggaucGCucGGAGAu -3'
miRNA:   3'- -GCugCGGGUGuUCGCgA-------UGcuCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 53484 0.66 0.903862
Target:  5'- aGGCcaCCCGacuCAGGCGCUACcAGGAGc -3'
miRNA:   3'- gCUGc-GGGU---GUUCGCGAUGcUCCUCu -5'
20388 5' -56.3 NC_004687.1 + 115988 0.66 0.903862
Target:  5'- aCGACGCUCACuaugcccauGAGCGCcagugGC-AGGAGc -3'
miRNA:   3'- -GCUGCGGGUG---------UUCGCGa----UGcUCCUCu -5'
20388 5' -56.3 NC_004687.1 + 1262 0.66 0.903862
Target:  5'- aGACGCUCGCAgcguAGCGCaGCGccaccagguccAGGuGAc -3'
miRNA:   3'- gCUGCGGGUGU----UCGCGaUGC-----------UCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 13653 0.66 0.903862
Target:  5'- uGGCcaggGCCCACAGGCGaggcCGguAGGGGAa -3'
miRNA:   3'- gCUG----CGGGUGUUCGCgau-GC--UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 30001 0.66 0.903862
Target:  5'- gGAUGCCCAggugcuuggcCAGGCcgcgcucgacccGCUcguCGAGGGGAa -3'
miRNA:   3'- gCUGCGGGU----------GUUCG------------CGAu--GCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 46242 0.66 0.897528
Target:  5'- uCGACGCgCugGAucuGCGCggaacucacUACGAGGcAGAg -3'
miRNA:   3'- -GCUGCGgGugUU---CGCG---------AUGCUCC-UCU- -5'
20388 5' -56.3 NC_004687.1 + 91845 0.66 0.897528
Target:  5'- aCGAgGUCgACGAGCugGCccGCGAGGAGc -3'
miRNA:   3'- -GCUgCGGgUGUUCG--CGa-UGCUCCUCu -5'
20388 5' -56.3 NC_004687.1 + 83851 0.66 0.897528
Target:  5'- cCGAaGCCCGCGacgucgGGaUGCUGCGGGGGc- -3'
miRNA:   3'- -GCUgCGGGUGU------UC-GCGAUGCUCCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.