miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20388 5' -56.3 NC_004687.1 + 1262 0.66 0.903862
Target:  5'- aGACGCUCGCAgcguAGCGCaGCGccaccagguccAGGuGAc -3'
miRNA:   3'- gCUGCGGGUGU----UCGCGaUGC-----------UCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 4752 0.69 0.740209
Target:  5'- gCGGCGCuggCCGCAGGC-CUGucaugaGAGGAGAg -3'
miRNA:   3'- -GCUGCG---GGUGUUCGcGAUg-----CUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 7307 0.66 0.88418
Target:  5'- uGACGCUCGCuGGGCGCUGaagugcucCGAGcGuGAg -3'
miRNA:   3'- gCUGCGGGUG-UUCGCGAU--------GCUC-CuCU- -5'
20388 5' -56.3 NC_004687.1 + 7358 0.76 0.392637
Target:  5'- gGACGUCCAgGAgGCGCUGCGccGAGAg -3'
miRNA:   3'- gCUGCGGGUgUU-CGCGAUGCucCUCU- -5'
20388 5' -56.3 NC_004687.1 + 10242 0.66 0.890966
Target:  5'- aCGAUGUCCuGCAcggcAGUGC-GCGAGGuGAg -3'
miRNA:   3'- -GCUGCGGG-UGU----UCGCGaUGCUCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 12185 0.7 0.730492
Target:  5'- cCGACGUCCGCAaggaccucaAGCGCUgggaccagaccgGCGAguggcuGGAGGa -3'
miRNA:   3'- -GCUGCGGGUGU---------UCGCGA------------UGCU------CCUCU- -5'
20388 5' -56.3 NC_004687.1 + 12498 0.67 0.847047
Target:  5'- cCGACcucuCCCAguaccugcgUGAGCGCUguggcaugaGCGAGGAGAc -3'
miRNA:   3'- -GCUGc---GGGU---------GUUCGCGA---------UGCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 13653 0.66 0.903862
Target:  5'- uGGCcaggGCCCACAGGCGaggcCGguAGGGGAa -3'
miRNA:   3'- gCUG----CGGGUGUUCGCgau-GC--UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 15762 0.67 0.846253
Target:  5'- cCGugGUCCugguggaGCGAGaGCUACGuccGGGAGAc -3'
miRNA:   3'- -GCugCGGG-------UGUUCgCGAUGC---UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 15886 0.66 0.915837
Target:  5'- uGGCGCCCA--AGCGCgccaagguucGCGAGGuucgcGAg -3'
miRNA:   3'- gCUGCGGGUguUCGCGa---------UGCUCCu----CU- -5'
20388 5' -56.3 NC_004687.1 + 17480 0.69 0.787223
Target:  5'- aCGAUGgCCACcugauGUGCgcCGAGGAGGa -3'
miRNA:   3'- -GCUGCgGGUGuu---CGCGauGCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 20902 0.69 0.768768
Target:  5'- uGACGCCgacguGCAGGCGCgcauCGAGGcccuGGAg -3'
miRNA:   3'- gCUGCGGg----UGUUCGCGau--GCUCC----UCU- -5'
20388 5' -56.3 NC_004687.1 + 23294 0.73 0.539641
Target:  5'- aGAgGCCUACGAGCGCgagcuCGcucAGGAGGa -3'
miRNA:   3'- gCUgCGGGUGUUCGCGau---GC---UCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 24914 0.71 0.670738
Target:  5'- uCGcCGCCCGCGAG-GCUGCGaAGGccuGAg -3'
miRNA:   3'- -GCuGCGGGUGUUCgCGAUGC-UCCu--CU- -5'
20388 5' -56.3 NC_004687.1 + 26710 0.66 0.909965
Target:  5'- aCGACGCCgACAAGgccgacuacuuCGCU-CGGGGcGGc -3'
miRNA:   3'- -GCUGCGGgUGUUC-----------GCGAuGCUCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 27070 0.66 0.909965
Target:  5'- cCGG-GCCCGCAGGCGa-GCGAucGGGGu -3'
miRNA:   3'- -GCUgCGGGUGUUCGCgaUGCU--CCUCu -5'
20388 5' -56.3 NC_004687.1 + 28025 0.67 0.844659
Target:  5'- cCGACGCCgUACGAccaucaggugugccGUGCcgcCGAGGAGAu -3'
miRNA:   3'- -GCUGCGG-GUGUU--------------CGCGau-GCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 29267 0.67 0.877174
Target:  5'- uGAUGCCCuccuCGuGCGCcauCGAGGuGAa -3'
miRNA:   3'- gCUGCGGGu---GUuCGCGau-GCUCCuCU- -5'
20388 5' -56.3 NC_004687.1 + 29904 0.66 0.909965
Target:  5'- uCGACGCCUACcgacGaCGCccUGAGGGGGa -3'
miRNA:   3'- -GCUGCGGGUGuu--C-GCGauGCUCCUCU- -5'
20388 5' -56.3 NC_004687.1 + 30001 0.66 0.903862
Target:  5'- gGAUGCCCAggugcuuggcCAGGCcgcgcucgacccGCUcguCGAGGGGAa -3'
miRNA:   3'- gCUGCGGGU----------GUUCG------------CGAu--GCUCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.