miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20389 3' -53.9 NC_004687.1 + 112084 0.66 0.972957
Target:  5'- uCUCAACGUgcgCGCGGUCcUGGACcacuacgGGGu -3'
miRNA:   3'- -GGGUUGCG---GCGCUAGuACCUGua-----CCU- -5'
20389 3' -53.9 NC_004687.1 + 131614 0.66 0.972957
Target:  5'- gCCCGuGCaCCGCGAUCugcgGGGCGUcGAu -3'
miRNA:   3'- -GGGU-UGcGGCGCUAGua--CCUGUAcCU- -5'
20389 3' -53.9 NC_004687.1 + 83554 0.66 0.972957
Target:  5'- gUCCGACgGCCagauggucgucgGCGAcaUCGUuGACGUGGAg -3'
miRNA:   3'- -GGGUUG-CGG------------CGCU--AGUAcCUGUACCU- -5'
20389 3' -53.9 NC_004687.1 + 10899 0.66 0.972957
Target:  5'- aCCCGGCaGCaCGcCGAUCGaacucugGGGCcgGGGu -3'
miRNA:   3'- -GGGUUG-CG-GC-GCUAGUa------CCUGuaCCU- -5'
20389 3' -53.9 NC_004687.1 + 105966 0.66 0.972957
Target:  5'- aUCCGGCGCUGCuGGaaaagcuccgUCAggcccUGGugGUGGGc -3'
miRNA:   3'- -GGGUUGCGGCG-CU----------AGU-----ACCugUACCU- -5'
20389 3' -53.9 NC_004687.1 + 121413 0.66 0.972957
Target:  5'- gCCCGaguacugcugcAUGCCGCaGUCAaaGGAgAUGGAc -3'
miRNA:   3'- -GGGU-----------UGCGGCGcUAGUa-CCUgUACCU- -5'
20389 3' -53.9 NC_004687.1 + 105764 0.66 0.970131
Target:  5'- gCUCGAUGCCagcaGCGAUCAUGGcuccgcCAgacGGAa -3'
miRNA:   3'- -GGGUUGCGG----CGCUAGUACCu-----GUa--CCU- -5'
20389 3' -53.9 NC_004687.1 + 4026 0.66 0.9671
Target:  5'- gUCCGgcguaaugGCGCCGUgcaccagaccccGAUCAUGGGCAUa-- -3'
miRNA:   3'- -GGGU--------UGCGGCG------------CUAGUACCUGUAccu -5'
20389 3' -53.9 NC_004687.1 + 20405 0.66 0.9671
Target:  5'- gCCCAGacCGCCGgGuugcagcugaacGUCAUGG-UGUGGAu -3'
miRNA:   3'- -GGGUU--GCGGCgC------------UAGUACCuGUACCU- -5'
20389 3' -53.9 NC_004687.1 + 129565 0.66 0.9671
Target:  5'- cCCCAAUGCCgacuggcggcguGCGGUCuccgaaaaaGAUAUGGAc -3'
miRNA:   3'- -GGGUUGCGG------------CGCUAGuac------CUGUACCU- -5'
20389 3' -53.9 NC_004687.1 + 77680 0.66 0.965828
Target:  5'- aCUCAACGCCcuggagagcgcggGCGGUgagaagauggccgaCAUGGGCcUGGGg -3'
miRNA:   3'- -GGGUUGCGG-------------CGCUA--------------GUACCUGuACCU- -5'
20389 3' -53.9 NC_004687.1 + 8210 0.66 0.963857
Target:  5'- aUCCAGugcaaggacCGCCGCGAgggccGGACGUGcGAg -3'
miRNA:   3'- -GGGUU---------GCGGCGCUagua-CCUGUAC-CU- -5'
20389 3' -53.9 NC_004687.1 + 125929 0.66 0.963857
Target:  5'- aUCAGCGCCGCGAUgAcGG-CGUaGGu -3'
miRNA:   3'- gGGUUGCGGCGCUAgUaCCuGUA-CCu -5'
20389 3' -53.9 NC_004687.1 + 25141 0.66 0.963857
Target:  5'- cCUCAaagGCGCCGaCGAUCGcGGGCAgcucGGc -3'
miRNA:   3'- -GGGU---UGCGGC-GCUAGUaCCUGUa---CCu -5'
20389 3' -53.9 NC_004687.1 + 20513 0.66 0.960397
Target:  5'- gCCAGgGCCuGC-AUCAUGGACccGGc -3'
miRNA:   3'- gGGUUgCGG-CGcUAGUACCUGuaCCu -5'
20389 3' -53.9 NC_004687.1 + 1112 0.66 0.960397
Target:  5'- uCCgGGCGCCcgggcCGAUC-UGGACAggcggcUGGAu -3'
miRNA:   3'- -GGgUUGCGGc----GCUAGuACCUGU------ACCU- -5'
20389 3' -53.9 NC_004687.1 + 104172 0.66 0.960397
Target:  5'- aCCCAGCa-CGCGGUCugGGGCGaGGAc -3'
miRNA:   3'- -GGGUUGcgGCGCUAGuaCCUGUaCCU- -5'
20389 3' -53.9 NC_004687.1 + 22758 0.66 0.960397
Target:  5'- aCCGGCGCCGUGGUCGagcUGGcCGc--- -3'
miRNA:   3'- gGGUUGCGGCGCUAGU---ACCuGUaccu -5'
20389 3' -53.9 NC_004687.1 + 39538 0.66 0.956715
Target:  5'- cCCCGGCGCCugGCG-UCGccGGGCcgGGc -3'
miRNA:   3'- -GGGUUGCGG--CGCuAGUa-CCUGuaCCu -5'
20389 3' -53.9 NC_004687.1 + 119893 0.66 0.956715
Target:  5'- cCCCGG-GCCGC--UCGgcuUGGugGUGGAu -3'
miRNA:   3'- -GGGUUgCGGCGcuAGU---ACCugUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.