miRNA display CGI


Results 1 - 20 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20389 5' -57 NC_004687.1 + 80276 0.65 0.924753
Target:  5'- aGGCCGGacagGUGUcucucggcucggCGGCGggCCcucuggagcucaacGGCACCg -3'
miRNA:   3'- -CCGGCUg---CACA------------GCUGCuaGG--------------CCGUGG- -5'
20389 5' -57 NC_004687.1 + 149750 0.65 0.924753
Target:  5'- cGCCGAgaCG-GUCGgccagcucuucgauGCGGUCUGGUgcGCCg -3'
miRNA:   3'- cCGGCU--GCaCAGC--------------UGCUAGGCCG--UGG- -5'
20389 5' -57 NC_004687.1 + 121205 0.66 0.921027
Target:  5'- cGGCgGGCGcGUCcuGAgGA-CCGGCGuCCu -3'
miRNA:   3'- -CCGgCUGCaCAG--CUgCUaGGCCGU-GG- -5'
20389 5' -57 NC_004687.1 + 95270 0.66 0.921027
Target:  5'- gGGuuGGCGaUGUUGACGuucUCCccgacGGcCACCu -3'
miRNA:   3'- -CCggCUGC-ACAGCUGCu--AGG-----CC-GUGG- -5'
20389 5' -57 NC_004687.1 + 48166 0.66 0.921027
Target:  5'- -cCCGGCccGUcCGAUGA-CCGGCAUCg -3'
miRNA:   3'- ccGGCUGcaCA-GCUGCUaGGCCGUGG- -5'
20389 5' -57 NC_004687.1 + 40377 0.66 0.921027
Target:  5'- -cCCGGC-UGUCGGCGAuauugagcaUCCaccgcugcucGGCACCc -3'
miRNA:   3'- ccGGCUGcACAGCUGCU---------AGG----------CCGUGG- -5'
20389 5' -57 NC_004687.1 + 28393 0.66 0.921027
Target:  5'- --aCGACGacGUCG-CGAUCuCGuGCGCCg -3'
miRNA:   3'- ccgGCUGCa-CAGCuGCUAG-GC-CGUGG- -5'
20389 5' -57 NC_004687.1 + 107788 0.66 0.921027
Target:  5'- cGCCGAgGgcgGUCG-CGAcgCCGGgGCg -3'
miRNA:   3'- cCGGCUgCa--CAGCuGCUa-GGCCgUGg -5'
20389 5' -57 NC_004687.1 + 25726 0.66 0.921027
Target:  5'- cGCCGguGCG-GUaGGCGAagccUCCGGCAgCg -3'
miRNA:   3'- cCGGC--UGCaCAgCUGCU----AGGCCGUgG- -5'
20389 5' -57 NC_004687.1 + 147972 0.66 0.921027
Target:  5'- aGGUCGAgCGUGguggccaguUCGccACGGUCCaGGaCGCCu -3'
miRNA:   3'- -CCGGCU-GCAC---------AGC--UGCUAGG-CC-GUGG- -5'
20389 5' -57 NC_004687.1 + 114672 0.66 0.921027
Target:  5'- cGGUCGGCuaUGcCGGgGAguaCGGCACCc -3'
miRNA:   3'- -CCGGCUGc-ACaGCUgCUag-GCCGUGG- -5'
20389 5' -57 NC_004687.1 + 45808 0.66 0.921027
Target:  5'- -cCCGACaGUcGUCGGCGGgcggCGGCAUCc -3'
miRNA:   3'- ccGGCUG-CA-CAGCUGCUag--GCCGUGG- -5'
20389 5' -57 NC_004687.1 + 63557 0.66 0.921027
Target:  5'- aGGUCGACGg--UGACGcuaccGUCCuuGCGCCg -3'
miRNA:   3'- -CCGGCUGCacaGCUGC-----UAGGc-CGUGG- -5'
20389 5' -57 NC_004687.1 + 109350 0.66 0.921027
Target:  5'- gGGUCGuaguucuCGUgGUUGACGAagaCCGGCuuuCCg -3'
miRNA:   3'- -CCGGCu------GCA-CAGCUGCUa--GGCCGu--GG- -5'
20389 5' -57 NC_004687.1 + 44496 0.66 0.918849
Target:  5'- cGUCGACccaggacagcugGUCGAUGAgcacgaagUCGGCGCCg -3'
miRNA:   3'- cCGGCUGca----------CAGCUGCUa-------GGCCGUGG- -5'
20389 5' -57 NC_004687.1 + 38592 0.66 0.917747
Target:  5'- cGCCGGgGUGUucaccuggaacaggcCuGCGGUCUGGCcCCg -3'
miRNA:   3'- cCGGCUgCACA---------------GcUGCUAGGCCGuGG- -5'
20389 5' -57 NC_004687.1 + 29678 0.66 0.916076
Target:  5'- cGCCGACGgucgCGugauggaccggguuGCGGUCCuccagcuccucccagGGCGCCa -3'
miRNA:   3'- cCGGCUGCaca-GC--------------UGCUAGG---------------CCGUGG- -5'
20389 5' -57 NC_004687.1 + 92111 0.66 0.915515
Target:  5'- cGCCGAUcaggaGcGUCGcCGcUCCGGgGCCg -3'
miRNA:   3'- cCGGCUG-----CaCAGCuGCuAGGCCgUGG- -5'
20389 5' -57 NC_004687.1 + 144845 0.66 0.915515
Target:  5'- aGCCGG-GUGaUCGGCcauaaggaguGggCCGGUACCg -3'
miRNA:   3'- cCGGCUgCAC-AGCUG----------CuaGGCCGUGG- -5'
20389 5' -57 NC_004687.1 + 115461 0.66 0.915515
Target:  5'- --aCGACGacGUCGGCGGgcacuUCCGGUuCCa -3'
miRNA:   3'- ccgGCUGCa-CAGCUGCU-----AGGCCGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.