miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 81599 0.65 0.806099
Target:  5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3'
miRNA:   3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 67020 0.66 0.804451
Target:  5'- cGCCgGcugCGGaGACAGCUGCggcgguccucgcgacGCUGCUg -3'
miRNA:   3'- cCGGgCa--GCCaCUGUCGGCG---------------CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 148268 0.66 0.80114
Target:  5'- uGGCCCGUCuGGacgcagaGCAGCgaGCGCaGCa -3'
miRNA:   3'- -CCGGGCAG-CCac-----UGUCGg-CGCGaCGg -5'
2039 5' -61.7 NC_001347.2 + 21336 0.66 0.80114
Target:  5'- aGGCUgG-CGGU-AUGGCUGCGC-GCCu -3'
miRNA:   3'- -CCGGgCaGCCAcUGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 196175 0.66 0.800309
Target:  5'- uGCCCGUcaaguacCGGacGCA-CCGCGCcGCCg -3'
miRNA:   3'- cCGGGCA-------GCCacUGUcGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 148604 0.66 0.792769
Target:  5'- cGGCgugaCCGgCGGUG-CGGUCGCGggugGCCg -3'
miRNA:   3'- -CCG----GGCaGCCACuGUCGGCGCga--CGG- -5'
2039 5' -61.7 NC_001347.2 + 128269 0.66 0.784274
Target:  5'- -aCCUGUaCGGUGGCGaCgGCGCcacUGCCg -3'
miRNA:   3'- ccGGGCA-GCCACUGUcGgCGCG---ACGG- -5'
2039 5' -61.7 NC_001347.2 + 165108 0.66 0.784274
Target:  5'- aGGUgCGgCGGUGGucGuuGuCGCUGCCg -3'
miRNA:   3'- -CCGgGCaGCCACUguCggC-GCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 165394 0.66 0.784274
Target:  5'- uGGUCC-UCGGUGAagaccaCGG-CGCGC-GCCa -3'
miRNA:   3'- -CCGGGcAGCCACU------GUCgGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 36444 0.66 0.784274
Target:  5'- cGGUCCGUCGaGaccGGCGGaCGCGgaGCg -3'
miRNA:   3'- -CCGGGCAGC-Ca--CUGUCgGCGCgaCGg -5'
2039 5' -61.7 NC_001347.2 + 152894 0.66 0.77566
Target:  5'- cGGCUgGUUGGUGGagagcuugagUAGCU-CGCUGCUc -3'
miRNA:   3'- -CCGGgCAGCCACU----------GUCGGcGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 30590 0.66 0.77566
Target:  5'- cGCgCCGggCGGcuuccugcgGcCGGCCGCGgUGCCg -3'
miRNA:   3'- cCG-GGCa-GCCa--------CuGUCGGCGCgACGG- -5'
2039 5' -61.7 NC_001347.2 + 145532 0.66 0.770438
Target:  5'- -uCCCGU-GGccaagcccuccacccUGACGGCCGCcGCgGCCg -3'
miRNA:   3'- ccGGGCAgCC---------------ACUGUCGGCG-CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 93970 0.66 0.766935
Target:  5'- cGCCCcgccgaCGGUGAUucguggucguGGCCaacugGUGCUGCCg -3'
miRNA:   3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 62437 0.66 0.766935
Target:  5'- gGGCCCGagaCGagaggaGUGGCuGCUGUGUUGUCu -3'
miRNA:   3'- -CCGGGCa--GC------CACUGuCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 96185 0.66 0.758107
Target:  5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3'
miRNA:   3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 208780 0.67 0.752764
Target:  5'- uGCCCGcggucUCGGUGAUgagccgaaacgaGaggcucagccgcugcGCCGCGCcGCCg -3'
miRNA:   3'- cCGGGC-----AGCCACUG------------U---------------CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 183081 0.67 0.749183
Target:  5'- cGGCUgGaaGGccgGACuGCUGUGUUGCCg -3'
miRNA:   3'- -CCGGgCagCCa--CUGuCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 25631 0.67 0.749183
Target:  5'- cGGUaCGUUGGUcaucuCGGCCGCGUUGUUc -3'
miRNA:   3'- -CCGgGCAGCCAcu---GUCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 184949 0.67 0.749183
Target:  5'- aGCUCGUCGGccggcgugGGCGGCuCGCggagacuggGCUGCa -3'
miRNA:   3'- cCGGGCAGCCa-------CUGUCG-GCG---------CGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.