Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2039 | 5' | -61.7 | NC_001347.2 | + | 1731 | 0.68 | 0.675211 |
Target: 5'- cGCCgG-CGGUgggccggcacGACGGUgGCGCUGCa -3' miRNA: 3'- cCGGgCaGCCA----------CUGUCGgCGCGACGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 140618 | 0.68 | 0.69403 |
Target: 5'- gGGCCCGagcgacggucUgGGUGGCGGUCGUGgUGgUg -3' miRNA: 3'- -CCGGGC----------AgCCACUGUCGGCGCgACgG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 111224 | 0.68 | 0.69403 |
Target: 5'- cGUCCccaGGUG-CAGCUGCGC-GCCg -3' miRNA: 3'- cCGGGcagCCACuGUCGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 68729 | 0.68 | 0.692155 |
Target: 5'- cGCUCGUCGGaggccguggagcGAguGCCGCcGCaGCCg -3' miRNA: 3'- cCGGGCAGCCa-----------CUguCGGCG-CGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 110111 | 0.68 | 0.69403 |
Target: 5'- gGGaCCCucGUCGGaaGCGGCCGCGaucagcgagGCCg -3' miRNA: 3'- -CC-GGG--CAGCCacUGUCGGCGCga-------CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 157998 | 0.68 | 0.69403 |
Target: 5'- aGGCUCGaCGGcGGCAGCUGCgGCgGUa -3' miRNA: 3'- -CCGGGCaGCCaCUGUCGGCG-CGaCGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 169119 | 0.68 | 0.675211 |
Target: 5'- cGGCC--UCGGccGCGcgcGCCGCGCUGCa -3' miRNA: 3'- -CCGGgcAGCCacUGU---CGGCGCGACGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 88597 | 0.69 | 0.599253 |
Target: 5'- aGCCUGggcgaccugagCGGcGGCGGCCuGCGCgGCCu -3' miRNA: 3'- cCGGGCa----------GCCaCUGUCGG-CGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 182194 | 0.69 | 0.589788 |
Target: 5'- cGGCCC-UCGGggugcgggUGGCgGGCUGCGUcGCCu -3' miRNA: 3'- -CCGGGcAGCC--------ACUG-UCGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 136087 | 0.69 | 0.589788 |
Target: 5'- gGGCCCG-CGGacgGACcggcGCCGgGCcucgGCCg -3' miRNA: 3'- -CCGGGCaGCCa--CUGu---CGGCgCGa---CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 66784 | 0.69 | 0.599253 |
Target: 5'- cGCCCGacggUGGUGGCGGCggcggcaGUGgaGCCg -3' miRNA: 3'- cCGGGCa---GCCACUGUCGg------CGCgaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 39189 | 0.69 | 0.599253 |
Target: 5'- cGGCCCGUgcUGuUGGCcaaaaacGCCGCGC-GCCa -3' miRNA: 3'- -CCGGGCA--GCcACUGu------CGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 1293 | 0.69 | 0.624895 |
Target: 5'- cGGCCguacggauucuacgCG-CgGGUGAC-GCCGCGCaGCCa -3' miRNA: 3'- -CCGG--------------GCaG-CCACUGuCGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 125289 | 0.69 | 0.618239 |
Target: 5'- cGCCgguggCGUCaGUGgcgcaaccgucGCAGCCGCGCcgGCCu -3' miRNA: 3'- cCGG-----GCAGcCAC-----------UGUCGGCGCGa-CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 171951 | 0.69 | 0.618239 |
Target: 5'- uGCaaGUCGGguuu-GCCGCGCUGCg -3' miRNA: 3'- cCGggCAGCCacuguCGGCGCGACGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 38454 | 0.69 | 0.618239 |
Target: 5'- -cCCCGUCGccGGCcccGCCGCGCaGCCc -3' miRNA: 3'- ccGGGCAGCcaCUGu--CGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 78404 | 0.69 | 0.627748 |
Target: 5'- gGGCCaCGUCGGgcuGCuGCCGcCGCcacccgGCCc -3' miRNA: 3'- -CCGG-GCAGCCac-UGuCGGC-GCGa-----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 156950 | 0.69 | 0.637261 |
Target: 5'- gGGCaCCGUCaucguGGUGGCgAG-CGCGCUccggGCCa -3' miRNA: 3'- -CCG-GGCAG-----CCACUG-UCgGCGCGA----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 173529 | 0.69 | 0.637261 |
Target: 5'- cGGCaaGUCGcGUGGCGGCgGCGgUGgUg -3' miRNA: 3'- -CCGggCAGC-CACUGUCGgCGCgACgG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 198089 | 0.69 | 0.627748 |
Target: 5'- cGGUCgCGaCGGUGACGGUCcCGCUcGUCg -3' miRNA: 3'- -CCGG-GCaGCCACUGUCGGcGCGA-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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