miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 168221 0.7 0.524573
Target:  5'- gGGCCgCGccUCcGUGGCAGCCGUuuccaGCUGCg -3'
miRNA:   3'- -CCGG-GC--AGcCACUGUCGGCG-----CGACGg -5'
2039 5' -61.7 NC_001347.2 + 178590 0.7 0.552249
Target:  5'- uGCCaaGUCGGUGaACAGCUacguGCGC-GCCa -3'
miRNA:   3'- cCGGg-CAGCCAC-UGUCGG----CGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 156508 0.7 0.523659
Target:  5'- cGGUCCGUCccuGUGGCgcgcccgcaugucGGCCGCGCUuaCg -3'
miRNA:   3'- -CCGGGCAGc--CACUG-------------UCGGCGCGAcgG- -5'
2039 5' -61.7 NC_001347.2 + 37990 0.7 0.570944
Target:  5'- cGGUCCaGcUCGGgcaGCAGCCGCcGCgcgGCCu -3'
miRNA:   3'- -CCGGG-C-AGCCac-UGUCGGCG-CGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 18066 0.7 0.561576
Target:  5'- uGGaagCCGUCGGUGuACuAGCCGUGC-GUCc -3'
miRNA:   3'- -CCg--GGCAGCCAC-UG-UCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 177610 0.7 0.58035
Target:  5'- cGGUCCGU-GGacuUGGUGGCCGCGCUcuugGCCg -3'
miRNA:   3'- -CCGGGCAgCC---ACUGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 189881 0.71 0.488536
Target:  5'- cGCCUGUcCGGcaGCAGCCGgGCcGCCu -3'
miRNA:   3'- cCGGGCA-GCCacUGUCGGCgCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 21247 0.71 0.497441
Target:  5'- uGCCCGUUuucacaGCAGCCGCGCUugucGCCa -3'
miRNA:   3'- cCGGGCAGccac--UGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 64969 0.71 0.514555
Target:  5'- cGCCCGUUGGUGAauguuacCAGaCGCGaugGCCc -3'
miRNA:   3'- cCGGGCAGCCACU-------GUCgGCGCga-CGG- -5'
2039 5' -61.7 NC_001347.2 + 128325 0.71 0.470956
Target:  5'- cGGCUCGUCGucacccgcGUG-UGGCCGCcGCUGCUc -3'
miRNA:   3'- -CCGGGCAGC--------CACuGUCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 142271 0.71 0.470956
Target:  5'- uGGCCgCGUCGcugaugGACAaguuuGCCGCGUUGCa -3'
miRNA:   3'- -CCGG-GCAGCca----CUGU-----CGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 84629 0.72 0.420264
Target:  5'- uGGCCuCG-CGGUGGCuGCCGCuacuaCUGUCg -3'
miRNA:   3'- -CCGG-GCaGCCACUGuCGGCGc----GACGG- -5'
2039 5' -61.7 NC_001347.2 + 147904 0.72 0.461425
Target:  5'- gGGgCCGUgGGUGGCgcgguGGCCuccguggucgaagGCGUUGCCa -3'
miRNA:   3'- -CCgGGCAgCCACUG-----UCGG-------------CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 165631 0.72 0.444362
Target:  5'- cGCCCGcCGGcgGGCAGCuucuuuugcaacuCGCGCUcaGCCg -3'
miRNA:   3'- cCGGGCaGCCa-CUGUCG-------------GCGCGA--CGG- -5'
2039 5' -61.7 NC_001347.2 + 2223 0.73 0.388359
Target:  5'- cGGCggCGUCGGgGACcguGCCGCGC-GCCa -3'
miRNA:   3'- -CCGg-GCAGCCaCUGu--CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 47581 0.73 0.373014
Target:  5'- gGGCCUGUCGGaGAUGGCCGUGagGCa -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGGCGCgaCGg -5'
2039 5' -61.7 NC_001347.2 + 168807 0.73 0.404113
Target:  5'- cGCgCG-CGGUGGCcaaacGGCCGCGCgacccgGCCg -3'
miRNA:   3'- cCGgGCaGCCACUG-----UCGGCGCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 94383 0.74 0.358087
Target:  5'- cGGCCCGU-GGau-CGGCCaGCGCUGUCu -3'
miRNA:   3'- -CCGGGCAgCCacuGUCGG-CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 911 0.75 0.296198
Target:  5'- cGCCCcUUGGUcGCGGCCGCGggGCCg -3'
miRNA:   3'- cCGGGcAGCCAcUGUCGGCGCgaCGG- -5'
2039 5' -61.7 NC_001347.2 + 188623 0.75 0.309199
Target:  5'- gGGUCCGUCGG-GACAGC-GCGUgggacgugagGCCg -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGgCGCGa---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.