Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2039 | 5' | -61.7 | NC_001347.2 | + | 1933 | 0.79 | 0.18034 |
Target: 5'- uGCCCGcgCGGUGGCugGGCUGCGCggcgggGCCg -3' miRNA: 3'- cCGGGCa-GCCACUG--UCGGCGCGa-----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 89394 | 0.78 | 0.202533 |
Target: 5'- uGGCUcaaagugaCGUCGGUGACAGCCGCgGCgcaGUCu -3' miRNA: 3'- -CCGG--------GCAGCCACUGUCGGCG-CGa--CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 113413 | 0.76 | 0.265567 |
Target: 5'- cGCCCGaCGcGUcGACAGCaGUGCUGCCg -3' miRNA: 3'- cCGGGCaGC-CA-CUGUCGgCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 188623 | 0.75 | 0.309199 |
Target: 5'- gGGUCCGUCGG-GACAGC-GCGUgggacgugagGCCg -3' miRNA: 3'- -CCGGGCAGCCaCUGUCGgCGCGa---------CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 911 | 0.75 | 0.296198 |
Target: 5'- cGCCCcUUGGUcGCGGCCGCGggGCCg -3' miRNA: 3'- cCGGGcAGCCAcUGUCGGCGCgaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 153656 | 0.75 | 0.296198 |
Target: 5'- cGGCCuCGUUGGUGAC-GCgGaUGUUGCCg -3' miRNA: 3'- -CCGG-GCAGCCACUGuCGgC-GCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 40508 | 0.75 | 0.315189 |
Target: 5'- cGGCaCCGggcuUCGG-GACGGUguuucggCGCGCUGCCg -3' miRNA: 3'- -CCG-GGC----AGCCaCUGUCG-------GCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 94383 | 0.74 | 0.358087 |
Target: 5'- cGGCCCGU-GGau-CGGCCaGCGCUGUCu -3' miRNA: 3'- -CCGGGCAgCCacuGUCGG-CGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 2223 | 0.73 | 0.388359 |
Target: 5'- cGGCggCGUCGGgGACcguGCCGCGC-GCCa -3' miRNA: 3'- -CCGg-GCAGCCaCUGu--CGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 168807 | 0.73 | 0.404113 |
Target: 5'- cGCgCG-CGGUGGCcaaacGGCCGCGCgacccgGCCg -3' miRNA: 3'- cCGgGCaGCCACUG-----UCGGCGCGa-----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 47581 | 0.73 | 0.373014 |
Target: 5'- gGGCCUGUCGGaGAUGGCCGUGagGCa -3' miRNA: 3'- -CCGGGCAGCCaCUGUCGGCGCgaCGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 147904 | 0.72 | 0.461425 |
Target: 5'- gGGgCCGUgGGUGGCgcgguGGCCuccguggucgaagGCGUUGCCa -3' miRNA: 3'- -CCgGGCAgCCACUG-----UCGG-------------CGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 84629 | 0.72 | 0.420264 |
Target: 5'- uGGCCuCG-CGGUGGCuGCCGCuacuaCUGUCg -3' miRNA: 3'- -CCGG-GCaGCCACUGuCGGCGc----GACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 165631 | 0.72 | 0.444362 |
Target: 5'- cGCCCGcCGGcgGGCAGCuucuuuugcaacuCGCGCUcaGCCg -3' miRNA: 3'- cCGGGCaGCCa-CUGUCG-------------GCGCGA--CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 128325 | 0.71 | 0.470956 |
Target: 5'- cGGCUCGUCGucacccgcGUG-UGGCCGCcGCUGCUc -3' miRNA: 3'- -CCGGGCAGC--------CACuGUCGGCG-CGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 64969 | 0.71 | 0.514555 |
Target: 5'- cGCCCGUUGGUGAauguuacCAGaCGCGaugGCCc -3' miRNA: 3'- cCGGGCAGCCACU-------GUCgGCGCga-CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 142271 | 0.71 | 0.470956 |
Target: 5'- uGGCCgCGUCGcugaugGACAaguuuGCCGCGUUGCa -3' miRNA: 3'- -CCGG-GCAGCca----CUGU-----CGGCGCGACGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 189881 | 0.71 | 0.488536 |
Target: 5'- cGCCUGUcCGGcaGCAGCCGgGCcGCCu -3' miRNA: 3'- cCGGGCA-GCCacUGUCGGCgCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 21247 | 0.71 | 0.497441 |
Target: 5'- uGCCCGUUuucacaGCAGCCGCGCUugucGCCa -3' miRNA: 3'- cCGGGCAGccac--UGUCGGCGCGA----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 178590 | 0.7 | 0.552249 |
Target: 5'- uGCCaaGUCGGUGaACAGCUacguGCGC-GCCa -3' miRNA: 3'- cCGGg-CAGCCAC-UGUCGG----CGCGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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