miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 177610 0.7 0.58035
Target:  5'- cGGUCCGU-GGacuUGGUGGCCGCGCUcuugGCCg -3'
miRNA:   3'- -CCGGGCAgCC---ACUGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 37990 0.7 0.570944
Target:  5'- cGGUCCaGcUCGGgcaGCAGCCGCcGCgcgGCCu -3'
miRNA:   3'- -CCGGG-C-AGCCac-UGUCGGCG-CGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 156508 0.7 0.523659
Target:  5'- cGGUCCGUCccuGUGGCgcgcccgcaugucGGCCGCGCUuaCg -3'
miRNA:   3'- -CCGGGCAGc--CACUG-------------UCGGCGCGAcgG- -5'
2039 5' -61.7 NC_001347.2 + 178590 0.7 0.552249
Target:  5'- uGCCaaGUCGGUGaACAGCUacguGCGC-GCCa -3'
miRNA:   3'- cCGGg-CAGCCAC-UGUCGG----CGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 168221 0.7 0.524573
Target:  5'- gGGCCgCGccUCcGUGGCAGCCGUuuccaGCUGCg -3'
miRNA:   3'- -CCGG-GC--AGcCACUGUCGGCG-----CGACGg -5'
2039 5' -61.7 NC_001347.2 + 198089 0.69 0.627748
Target:  5'- cGGUCgCGaCGGUGACGGUCcCGCUcGUCg -3'
miRNA:   3'- -CCGG-GCaGCCACUGUCGGcGCGA-CGG- -5'
2039 5' -61.7 NC_001347.2 + 171951 0.69 0.618239
Target:  5'- uGCaaGUCGGguuu-GCCGCGCUGCg -3'
miRNA:   3'- cCGggCAGCCacuguCGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 39189 0.69 0.599253
Target:  5'- cGGCCCGUgcUGuUGGCcaaaaacGCCGCGC-GCCa -3'
miRNA:   3'- -CCGGGCA--GCcACUGu------CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 173529 0.69 0.637261
Target:  5'- cGGCaaGUCGcGUGGCGGCgGCGgUGgUg -3'
miRNA:   3'- -CCGggCAGC-CACUGUCGgCGCgACgG- -5'
2039 5' -61.7 NC_001347.2 + 88597 0.69 0.599253
Target:  5'- aGCCUGggcgaccugagCGGcGGCGGCCuGCGCgGCCu -3'
miRNA:   3'- cCGGGCa----------GCCaCUGUCGG-CGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 38454 0.69 0.618239
Target:  5'- -cCCCGUCGccGGCcccGCCGCGCaGCCc -3'
miRNA:   3'- ccGGGCAGCcaCUGu--CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 156950 0.69 0.637261
Target:  5'- gGGCaCCGUCaucguGGUGGCgAG-CGCGCUccggGCCa -3'
miRNA:   3'- -CCG-GGCAG-----CCACUG-UCgGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 78404 0.69 0.627748
Target:  5'- gGGCCaCGUCGGgcuGCuGCCGcCGCcacccgGCCc -3'
miRNA:   3'- -CCGG-GCAGCCac-UGuCGGC-GCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 136087 0.69 0.589788
Target:  5'- gGGCCCG-CGGacgGACcggcGCCGgGCcucgGCCg -3'
miRNA:   3'- -CCGGGCaGCCa--CUGu---CGGCgCGa---CGG- -5'
2039 5' -61.7 NC_001347.2 + 125289 0.69 0.618239
Target:  5'- cGCCgguggCGUCaGUGgcgcaaccgucGCAGCCGCGCcgGCCu -3'
miRNA:   3'- cCGG-----GCAGcCAC-----------UGUCGGCGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 1293 0.69 0.624895
Target:  5'- cGGCCguacggauucuacgCG-CgGGUGAC-GCCGCGCaGCCa -3'
miRNA:   3'- -CCGG--------------GCaG-CCACUGuCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 66784 0.69 0.599253
Target:  5'- cGCCCGacggUGGUGGCGGCggcggcaGUGgaGCCg -3'
miRNA:   3'- cCGGGCa---GCCACUGUCGg------CGCgaCGG- -5'
2039 5' -61.7 NC_001347.2 + 182194 0.69 0.589788
Target:  5'- cGGCCC-UCGGggugcgggUGGCgGGCUGCGUcGCCu -3'
miRNA:   3'- -CCGGGcAGCC--------ACUG-UCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 209052 0.68 0.64677
Target:  5'- cGCUCG-CGGUuGCGGUCGCGCaccgGCUg -3'
miRNA:   3'- cCGGGCaGCCAcUGUCGGCGCGa---CGG- -5'
2039 5' -61.7 NC_001347.2 + 66581 0.68 0.675211
Target:  5'- gGGCCC-UCGccGGCGGCCGU--UGCCg -3'
miRNA:   3'- -CCGGGcAGCcaCUGUCGGCGcgACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.