Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2039 | 5' | -61.7 | NC_001347.2 | + | 96185 | 0.66 | 0.758107 |
Target: 5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3' miRNA: 3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 62437 | 0.66 | 0.766935 |
Target: 5'- gGGCCCGagaCGagaggaGUGGCuGCUGUGUUGUCu -3' miRNA: 3'- -CCGGGCa--GC------CACUGuCGGCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 93970 | 0.66 | 0.766935 |
Target: 5'- cGCCCcgccgaCGGUGAUucguggucguGGCCaacugGUGCUGCCg -3' miRNA: 3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 67020 | 0.66 | 0.804451 |
Target: 5'- cGCCgGcugCGGaGACAGCUGCggcgguccucgcgacGCUGCUg -3' miRNA: 3'- cCGGgCa--GCCaCUGUCGGCG---------------CGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 81599 | 0.65 | 0.806099 |
Target: 5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3' miRNA: 3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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