miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 1933 0.79 0.18034
Target:  5'- uGCCCGcgCGGUGGCugGGCUGCGCggcgggGCCg -3'
miRNA:   3'- cCGGGCa-GCCACUG--UCGGCGCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 89394 0.78 0.202533
Target:  5'- uGGCUcaaagugaCGUCGGUGACAGCCGCgGCgcaGUCu -3'
miRNA:   3'- -CCGG--------GCAGCCACUGUCGGCG-CGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 113413 0.76 0.265567
Target:  5'- cGCCCGaCGcGUcGACAGCaGUGCUGCCg -3'
miRNA:   3'- cCGGGCaGC-CA-CUGUCGgCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 911 0.75 0.296198
Target:  5'- cGCCCcUUGGUcGCGGCCGCGggGCCg -3'
miRNA:   3'- cCGGGcAGCCAcUGUCGGCGCgaCGG- -5'
2039 5' -61.7 NC_001347.2 + 153656 0.75 0.296198
Target:  5'- cGGCCuCGUUGGUGAC-GCgGaUGUUGCCg -3'
miRNA:   3'- -CCGG-GCAGCCACUGuCGgC-GCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 188623 0.75 0.309199
Target:  5'- gGGUCCGUCGG-GACAGC-GCGUgggacgugagGCCg -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGgCGCGa---------CGG- -5'
2039 5' -61.7 NC_001347.2 + 40508 0.75 0.315189
Target:  5'- cGGCaCCGggcuUCGG-GACGGUguuucggCGCGCUGCCg -3'
miRNA:   3'- -CCG-GGC----AGCCaCUGUCG-------GCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 94383 0.74 0.358087
Target:  5'- cGGCCCGU-GGau-CGGCCaGCGCUGUCu -3'
miRNA:   3'- -CCGGGCAgCCacuGUCGG-CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 47581 0.73 0.373014
Target:  5'- gGGCCUGUCGGaGAUGGCCGUGagGCa -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGGCGCgaCGg -5'
2039 5' -61.7 NC_001347.2 + 2223 0.73 0.388359
Target:  5'- cGGCggCGUCGGgGACcguGCCGCGC-GCCa -3'
miRNA:   3'- -CCGg-GCAGCCaCUGu--CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 168807 0.73 0.404113
Target:  5'- cGCgCG-CGGUGGCcaaacGGCCGCGCgacccgGCCg -3'
miRNA:   3'- cCGgGCaGCCACUG-----UCGGCGCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 84629 0.72 0.420264
Target:  5'- uGGCCuCG-CGGUGGCuGCCGCuacuaCUGUCg -3'
miRNA:   3'- -CCGG-GCaGCCACUGuCGGCGc----GACGG- -5'
2039 5' -61.7 NC_001347.2 + 165631 0.72 0.444362
Target:  5'- cGCCCGcCGGcgGGCAGCuucuuuugcaacuCGCGCUcaGCCg -3'
miRNA:   3'- cCGGGCaGCCa-CUGUCG-------------GCGCGA--CGG- -5'
2039 5' -61.7 NC_001347.2 + 147904 0.72 0.461425
Target:  5'- gGGgCCGUgGGUGGCgcgguGGCCuccguggucgaagGCGUUGCCa -3'
miRNA:   3'- -CCgGGCAgCCACUG-----UCGG-------------CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 128325 0.71 0.470956
Target:  5'- cGGCUCGUCGucacccgcGUG-UGGCCGCcGCUGCUc -3'
miRNA:   3'- -CCGGGCAGC--------CACuGUCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 142271 0.71 0.470956
Target:  5'- uGGCCgCGUCGcugaugGACAaguuuGCCGCGUUGCa -3'
miRNA:   3'- -CCGG-GCAGCca----CUGU-----CGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 189881 0.71 0.488536
Target:  5'- cGCCUGUcCGGcaGCAGCCGgGCcGCCu -3'
miRNA:   3'- cCGGGCA-GCCacUGUCGGCgCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 21247 0.71 0.497441
Target:  5'- uGCCCGUUuucacaGCAGCCGCGCUugucGCCa -3'
miRNA:   3'- cCGGGCAGccac--UGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 64969 0.71 0.514555
Target:  5'- cGCCCGUUGGUGAauguuacCAGaCGCGaugGCCc -3'
miRNA:   3'- cCGGGCAGCCACU-------GUCgGCGCga-CGG- -5'
2039 5' -61.7 NC_001347.2 + 156508 0.7 0.523659
Target:  5'- cGGUCCGUCccuGUGGCgcgcccgcaugucGGCCGCGCUuaCg -3'
miRNA:   3'- -CCGGGCAGc--CACUG-------------UCGGCGCGAcgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.