miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 153077 0.67 0.74017
Target:  5'- cGGCgagaUGUCGa-GGCAGgUGUGCUGCCg -3'
miRNA:   3'- -CCGg---GCAGCcaCUGUCgGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 67504 0.67 0.74017
Target:  5'- cGCaCCGUCGGUGccgGCGGCCaCGUccGUCa -3'
miRNA:   3'- cCG-GGCAGCCAC---UGUCGGcGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 181573 0.67 0.74017
Target:  5'- aGGCCC--UGuGUGACAGCCcaGCaCUGUCg -3'
miRNA:   3'- -CCGGGcaGC-CACUGUCGG--CGcGACGG- -5'
2039 5' -61.7 NC_001347.2 + 197747 0.67 0.736541
Target:  5'- cGGCCaggucauccgcgaGUCGGccugcuacGugAGCCGCguGCUGCUa -3'
miRNA:   3'- -CCGGg------------CAGCCa-------CugUCGGCG--CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 77028 0.67 0.731075
Target:  5'- gGGCCaa-CGGUcGACgcagGGCaCGCGCgUGCCg -3'
miRNA:   3'- -CCGGgcaGCCA-CUG----UCG-GCGCG-ACGG- -5'
2039 5' -61.7 NC_001347.2 + 135593 0.67 0.730161
Target:  5'- cGGCCCaccuaccgucgucGUCGGccGACcGCCGCGacccccaGCCg -3'
miRNA:   3'- -CCGGG-------------CAGCCa-CUGuCGGCGCga-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 105984 0.67 0.721906
Target:  5'- cGCCCGcgCGGccGCAGCaCGUGUcGCCc -3'
miRNA:   3'- cCGGGCa-GCCacUGUCG-GCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 15541 0.67 0.721906
Target:  5'- --aUUGUCGGUGuggaaGCAGCCgaGCGCgagGCCg -3'
miRNA:   3'- ccgGGCAGCCAC-----UGUCGG--CGCGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 38236 0.67 0.721906
Target:  5'- --aCCGUCGGc-GCcGCUGCuGCUGCCg -3'
miRNA:   3'- ccgGGCAGCCacUGuCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 164668 0.67 0.712671
Target:  5'- aGCUCGUCGaaggacggcgccGUGGCcguuGCCGCGUUagcGCCg -3'
miRNA:   3'- cCGGGCAGC------------CACUGu---CGGCGCGA---CGG- -5'
2039 5' -61.7 NC_001347.2 + 43 0.67 0.711744
Target:  5'- gGGUgUGUCGGggcGCGGCCGgGUgggugugUGCCg -3'
miRNA:   3'- -CCGgGCAGCCac-UGUCGGCgCG-------ACGG- -5'
2039 5' -61.7 NC_001347.2 + 115505 0.67 0.703377
Target:  5'- uGCCgaaacCGGUGcCGGCCGCGCUaGCg -3'
miRNA:   3'- cCGGgca--GCCACuGUCGGCGCGA-CGg -5'
2039 5' -61.7 NC_001347.2 + 157998 0.68 0.69403
Target:  5'- aGGCUCGaCGGcGGCAGCUGCgGCgGUa -3'
miRNA:   3'- -CCGGGCaGCCaCUGUCGGCG-CGaCGg -5'
2039 5' -61.7 NC_001347.2 + 110111 0.68 0.69403
Target:  5'- gGGaCCCucGUCGGaaGCGGCCGCGaucagcgagGCCg -3'
miRNA:   3'- -CC-GGG--CAGCCacUGUCGGCGCga-------CGG- -5'
2039 5' -61.7 NC_001347.2 + 111224 0.68 0.69403
Target:  5'- cGUCCccaGGUG-CAGCUGCGC-GCCg -3'
miRNA:   3'- cCGGGcagCCACuGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 140618 0.68 0.69403
Target:  5'- gGGCCCGagcgacggucUgGGUGGCGGUCGUGgUGgUg -3'
miRNA:   3'- -CCGGGC----------AgCCACUGUCGGCGCgACgG- -5'
2039 5' -61.7 NC_001347.2 + 68729 0.68 0.692155
Target:  5'- cGCUCGUCGGaggccguggagcGAguGCCGCcGCaGCCg -3'
miRNA:   3'- cCGGGCAGCCa-----------CUguCGGCG-CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 169119 0.68 0.675211
Target:  5'- cGGCC--UCGGccGCGcgcGCCGCGCUGCa -3'
miRNA:   3'- -CCGGgcAGCCacUGU---CGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 1731 0.68 0.675211
Target:  5'- cGCCgG-CGGUgggccggcacGACGGUgGCGCUGCa -3'
miRNA:   3'- cCGGgCaGCCA----------CUGUCGgCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 66581 0.68 0.675211
Target:  5'- gGGCCC-UCGccGGCGGCCGU--UGCCg -3'
miRNA:   3'- -CCGGGcAGCcaCUGUCGGCGcgACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.