miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 43 0.67 0.711744
Target:  5'- gGGUgUGUCGGggcGCGGCCGgGUgggugugUGCCg -3'
miRNA:   3'- -CCGgGCAGCCac-UGUCGGCgCG-------ACGG- -5'
2039 5' -61.7 NC_001347.2 + 911 0.75 0.296198
Target:  5'- cGCCCcUUGGUcGCGGCCGCGggGCCg -3'
miRNA:   3'- cCGGGcAGCCAcUGUCGGCGCgaCGG- -5'
2039 5' -61.7 NC_001347.2 + 1293 0.69 0.624895
Target:  5'- cGGCCguacggauucuacgCG-CgGGUGAC-GCCGCGCaGCCa -3'
miRNA:   3'- -CCGG--------------GCaG-CCACUGuCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 1731 0.68 0.675211
Target:  5'- cGCCgG-CGGUgggccggcacGACGGUgGCGCUGCa -3'
miRNA:   3'- cCGGgCaGCCA----------CUGUCGgCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 1933 0.79 0.18034
Target:  5'- uGCCCGcgCGGUGGCugGGCUGCGCggcgggGCCg -3'
miRNA:   3'- cCGGGCa-GCCACUG--UCGGCGCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 2223 0.73 0.388359
Target:  5'- cGGCggCGUCGGgGACcguGCCGCGC-GCCa -3'
miRNA:   3'- -CCGg-GCAGCCaCUGu--CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 15541 0.67 0.721906
Target:  5'- --aUUGUCGGUGuggaaGCAGCCgaGCGCgagGCCg -3'
miRNA:   3'- ccgGGCAGCCAC-----UGUCGG--CGCGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 18066 0.7 0.561576
Target:  5'- uGGaagCCGUCGGUGuACuAGCCGUGC-GUCc -3'
miRNA:   3'- -CCg--GGCAGCCAC-UG-UCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 21247 0.71 0.497441
Target:  5'- uGCCCGUUuucacaGCAGCCGCGCUugucGCCa -3'
miRNA:   3'- cCGGGCAGccac--UGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 21336 0.66 0.80114
Target:  5'- aGGCUgG-CGGU-AUGGCUGCGC-GCCu -3'
miRNA:   3'- -CCGGgCaGCCAcUGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 25376 0.68 0.65532
Target:  5'- uGGCgCCGUgGGuUGGCAGCuggccggcuugacCGCGUUGUUg -3'
miRNA:   3'- -CCG-GGCAgCC-ACUGUCG-------------GCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 25631 0.67 0.749183
Target:  5'- cGGUaCGUUGGUcaucuCGGCCGCGUUGUUc -3'
miRNA:   3'- -CCGgGCAGCCAcu---GUCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 30590 0.66 0.77566
Target:  5'- cGCgCCGggCGGcuuccugcgGcCGGCCGCGgUGCCg -3'
miRNA:   3'- cCG-GGCa-GCCa--------CuGUCGGCGCgACGG- -5'
2039 5' -61.7 NC_001347.2 + 36444 0.66 0.784274
Target:  5'- cGGUCCGUCGaGaccGGCGGaCGCGgaGCg -3'
miRNA:   3'- -CCGGGCAGC-Ca--CUGUCgGCGCgaCGg -5'
2039 5' -61.7 NC_001347.2 + 37990 0.7 0.570944
Target:  5'- cGGUCCaGcUCGGgcaGCAGCCGCcGCgcgGCCu -3'
miRNA:   3'- -CCGGG-C-AGCCac-UGUCGGCG-CGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 38236 0.67 0.721906
Target:  5'- --aCCGUCGGc-GCcGCUGCuGCUGCCg -3'
miRNA:   3'- ccgGGCAGCCacUGuCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 38454 0.69 0.618239
Target:  5'- -cCCCGUCGccGGCcccGCCGCGCaGCCc -3'
miRNA:   3'- ccGGGCAGCcaCUGu--CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 39189 0.69 0.599253
Target:  5'- cGGCCCGUgcUGuUGGCcaaaaacGCCGCGC-GCCa -3'
miRNA:   3'- -CCGGGCA--GCcACUGu------CGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 40508 0.75 0.315189
Target:  5'- cGGCaCCGggcuUCGG-GACGGUguuucggCGCGCUGCCg -3'
miRNA:   3'- -CCG-GGC----AGCCaCUGUCG-------GCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 47581 0.73 0.373014
Target:  5'- gGGCCUGUCGGaGAUGGCCGUGagGCa -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGGCGCgaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.