miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 111224 0.68 0.69403
Target:  5'- cGUCCccaGGUG-CAGCUGCGC-GCCg -3'
miRNA:   3'- cCGGGcagCCACuGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 113413 0.76 0.265567
Target:  5'- cGCCCGaCGcGUcGACAGCaGUGCUGCCg -3'
miRNA:   3'- cCGGGCaGC-CA-CUGUCGgCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 115505 0.67 0.703377
Target:  5'- uGCCgaaacCGGUGcCGGCCGCGCUaGCg -3'
miRNA:   3'- cCGGgca--GCCACuGUCGGCGCGA-CGg -5'
2039 5' -61.7 NC_001347.2 + 125289 0.69 0.618239
Target:  5'- cGCCgguggCGUCaGUGgcgcaaccgucGCAGCCGCGCcgGCCu -3'
miRNA:   3'- cCGG-----GCAGcCAC-----------UGUCGGCGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 127580 0.68 0.665752
Target:  5'- uGCCCGU-GGacGCGGCCGgCGC-GCCu -3'
miRNA:   3'- cCGGGCAgCCacUGUCGGC-GCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 128269 0.66 0.784274
Target:  5'- -aCCUGUaCGGUGGCGaCgGCGCcacUGCCg -3'
miRNA:   3'- ccGGGCA-GCCACUGUcGgCGCG---ACGG- -5'
2039 5' -61.7 NC_001347.2 + 128325 0.71 0.470956
Target:  5'- cGGCUCGUCGucacccgcGUG-UGGCCGCcGCUGCUc -3'
miRNA:   3'- -CCGGGCAGC--------CACuGUCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 135593 0.67 0.730161
Target:  5'- cGGCCCaccuaccgucgucGUCGGccGACcGCCGCGacccccaGCCg -3'
miRNA:   3'- -CCGGG-------------CAGCCa-CUGuCGGCGCga-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 136087 0.69 0.589788
Target:  5'- gGGCCCG-CGGacgGACcggcGCCGgGCcucgGCCg -3'
miRNA:   3'- -CCGGGCaGCCa--CUGu---CGGCgCGa---CGG- -5'
2039 5' -61.7 NC_001347.2 + 140618 0.68 0.69403
Target:  5'- gGGCCCGagcgacggucUgGGUGGCGGUCGUGgUGgUg -3'
miRNA:   3'- -CCGGGC----------AgCCACUGUCGGCGCgACgG- -5'
2039 5' -61.7 NC_001347.2 + 142271 0.71 0.470956
Target:  5'- uGGCCgCGUCGcugaugGACAaguuuGCCGCGUUGCa -3'
miRNA:   3'- -CCGG-GCAGCca----CUGU-----CGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 145532 0.66 0.770438
Target:  5'- -uCCCGU-GGccaagcccuccacccUGACGGCCGCcGCgGCCg -3'
miRNA:   3'- ccGGGCAgCC---------------ACUGUCGGCG-CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 147904 0.72 0.461425
Target:  5'- gGGgCCGUgGGUGGCgcgguGGCCuccguggucgaagGCGUUGCCa -3'
miRNA:   3'- -CCgGGCAgCCACUG-----UCGG-------------CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 148268 0.66 0.80114
Target:  5'- uGGCCCGUCuGGacgcagaGCAGCgaGCGCaGCa -3'
miRNA:   3'- -CCGGGCAG-CCac-----UGUCGg-CGCGaCGg -5'
2039 5' -61.7 NC_001347.2 + 148604 0.66 0.792769
Target:  5'- cGGCgugaCCGgCGGUG-CGGUCGCGggugGCCg -3'
miRNA:   3'- -CCG----GGCaGCCACuGUCGGCGCga--CGG- -5'
2039 5' -61.7 NC_001347.2 + 152894 0.66 0.77566
Target:  5'- cGGCUgGUUGGUGGagagcuugagUAGCU-CGCUGCUc -3'
miRNA:   3'- -CCGGgCAGCCACU----------GUCGGcGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 153077 0.67 0.74017
Target:  5'- cGGCgagaUGUCGa-GGCAGgUGUGCUGCCg -3'
miRNA:   3'- -CCGg---GCAGCcaCUGUCgGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 153656 0.75 0.296198
Target:  5'- cGGCCuCGUUGGUGAC-GCgGaUGUUGCCg -3'
miRNA:   3'- -CCGG-GCAGCCACUGuCGgC-GCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 156508 0.7 0.523659
Target:  5'- cGGUCCGUCccuGUGGCgcgcccgcaugucGGCCGCGCUuaCg -3'
miRNA:   3'- -CCGGGCAGc--CACUG-------------UCGGCGCGAcgG- -5'
2039 5' -61.7 NC_001347.2 + 156950 0.69 0.637261
Target:  5'- gGGCaCCGUCaucguGGUGGCgAG-CGCGCUccggGCCa -3'
miRNA:   3'- -CCG-GGCAG-----CCACUG-UCgGCGCGA----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.