miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 157998 0.68 0.69403
Target:  5'- aGGCUCGaCGGcGGCAGCUGCgGCgGUa -3'
miRNA:   3'- -CCGGGCaGCCaCUGUCGGCG-CGaCGg -5'
2039 5' -61.7 NC_001347.2 + 162095 0.68 0.665752
Target:  5'- cGGCCuCGUCGcUGAgCgcuuuccgGGCCGCGUcgGCCu -3'
miRNA:   3'- -CCGG-GCAGCcACU-G--------UCGGCGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 164668 0.67 0.712671
Target:  5'- aGCUCGUCGaaggacggcgccGUGGCcguuGCCGCGUUagcGCCg -3'
miRNA:   3'- cCGGGCAGC------------CACUGu---CGGCGCGA---CGG- -5'
2039 5' -61.7 NC_001347.2 + 165108 0.66 0.784274
Target:  5'- aGGUgCGgCGGUGGucGuuGuCGCUGCCg -3'
miRNA:   3'- -CCGgGCaGCCACUguCggC-GCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 165394 0.66 0.784274
Target:  5'- uGGUCC-UCGGUGAagaccaCGG-CGCGC-GCCa -3'
miRNA:   3'- -CCGGGcAGCCACU------GUCgGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 165631 0.72 0.444362
Target:  5'- cGCCCGcCGGcgGGCAGCuucuuuugcaacuCGCGCUcaGCCg -3'
miRNA:   3'- cCGGGCaGCCa-CUGUCG-------------GCGCGA--CGG- -5'
2039 5' -61.7 NC_001347.2 + 168221 0.7 0.524573
Target:  5'- gGGCCgCGccUCcGUGGCAGCCGUuuccaGCUGCg -3'
miRNA:   3'- -CCGG-GC--AGcCACUGUCGGCG-----CGACGg -5'
2039 5' -61.7 NC_001347.2 + 168807 0.73 0.404113
Target:  5'- cGCgCG-CGGUGGCcaaacGGCCGCGCgacccgGCCg -3'
miRNA:   3'- cCGgGCaGCCACUG-----UCGGCGCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 169119 0.68 0.675211
Target:  5'- cGGCC--UCGGccGCGcgcGCCGCGCUGCa -3'
miRNA:   3'- -CCGGgcAGCCacUGU---CGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 170891 0.68 0.675211
Target:  5'- aGCgCUGUCGcGaugGGCAGCUGuCGCUGUCc -3'
miRNA:   3'- cCG-GGCAGC-Ca--CUGUCGGC-GCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 171951 0.69 0.618239
Target:  5'- uGCaaGUCGGguuu-GCCGCGCUGCg -3'
miRNA:   3'- cCGggCAGCCacuguCGGCGCGACGg -5'
2039 5' -61.7 NC_001347.2 + 173529 0.69 0.637261
Target:  5'- cGGCaaGUCGcGUGGCGGCgGCGgUGgUg -3'
miRNA:   3'- -CCGggCAGC-CACUGUCGgCGCgACgG- -5'
2039 5' -61.7 NC_001347.2 + 177610 0.7 0.58035
Target:  5'- cGGUCCGU-GGacuUGGUGGCCGCGCUcuugGCCg -3'
miRNA:   3'- -CCGGGCAgCC---ACUGUCGGCGCGA----CGG- -5'
2039 5' -61.7 NC_001347.2 + 178590 0.7 0.552249
Target:  5'- uGCCaaGUCGGUGaACAGCUacguGCGC-GCCa -3'
miRNA:   3'- cCGGg-CAGCCAC-UGUCGG----CGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 181573 0.67 0.74017
Target:  5'- aGGCCC--UGuGUGACAGCCcaGCaCUGUCg -3'
miRNA:   3'- -CCGGGcaGC-CACUGUCGG--CGcGACGG- -5'
2039 5' -61.7 NC_001347.2 + 182194 0.69 0.589788
Target:  5'- cGGCCC-UCGGggugcgggUGGCgGGCUGCGUcGCCu -3'
miRNA:   3'- -CCGGGcAGCC--------ACUG-UCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 183081 0.67 0.749183
Target:  5'- cGGCUgGaaGGccgGACuGCUGUGUUGCCg -3'
miRNA:   3'- -CCGGgCagCCa--CUGuCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 184949 0.67 0.749183
Target:  5'- aGCUCGUCGGccggcgugGGCGGCuCGCggagacuggGCUGCa -3'
miRNA:   3'- cCGGGCAGCCa-------CUGUCG-GCG---------CGACGg -5'
2039 5' -61.7 NC_001347.2 + 188623 0.75 0.309199
Target:  5'- gGGUCCGUCGG-GACAGC-GCGUgggacgugagGCCg -3'
miRNA:   3'- -CCGGGCAGCCaCUGUCGgCGCGa---------CGG- -5'
2039 5' -61.7 NC_001347.2 + 189881 0.71 0.488536
Target:  5'- cGCCUGUcCGGcaGCAGCCGgGCcGCCu -3'
miRNA:   3'- cCGGGCA-GCCacUGUCGGCgCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.