miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 127580 0.68 0.665752
Target:  5'- uGCCCGU-GGacGCGGCCGgCGC-GCCu -3'
miRNA:   3'- cCGGGCAgCCacUGUCGGC-GCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 125289 0.69 0.618239
Target:  5'- cGCCgguggCGUCaGUGgcgcaaccgucGCAGCCGCGCcgGCCu -3'
miRNA:   3'- cCGG-----GCAGcCAC-----------UGUCGGCGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 115505 0.67 0.703377
Target:  5'- uGCCgaaacCGGUGcCGGCCGCGCUaGCg -3'
miRNA:   3'- cCGGgca--GCCACuGUCGGCGCGA-CGg -5'
2039 5' -61.7 NC_001347.2 + 113413 0.76 0.265567
Target:  5'- cGCCCGaCGcGUcGACAGCaGUGCUGCCg -3'
miRNA:   3'- cCGGGCaGC-CA-CUGUCGgCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 111224 0.68 0.69403
Target:  5'- cGUCCccaGGUG-CAGCUGCGC-GCCg -3'
miRNA:   3'- cCGGGcagCCACuGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 110111 0.68 0.69403
Target:  5'- gGGaCCCucGUCGGaaGCGGCCGCGaucagcgagGCCg -3'
miRNA:   3'- -CC-GGG--CAGCCacUGUCGGCGCga-------CGG- -5'
2039 5' -61.7 NC_001347.2 + 105984 0.67 0.721906
Target:  5'- cGCCCGcgCGGccGCAGCaCGUGUcGCCc -3'
miRNA:   3'- cCGGGCa-GCCacUGUCG-GCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 96185 0.66 0.758107
Target:  5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3'
miRNA:   3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 94383 0.74 0.358087
Target:  5'- cGGCCCGU-GGau-CGGCCaGCGCUGUCu -3'
miRNA:   3'- -CCGGGCAgCCacuGUCGG-CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 93970 0.66 0.766935
Target:  5'- cGCCCcgccgaCGGUGAUucguggucguGGCCaacugGUGCUGCCg -3'
miRNA:   3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 89394 0.78 0.202533
Target:  5'- uGGCUcaaagugaCGUCGGUGACAGCCGCgGCgcaGUCu -3'
miRNA:   3'- -CCGG--------GCAGCCACUGUCGGCG-CGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 88597 0.69 0.599253
Target:  5'- aGCCUGggcgaccugagCGGcGGCGGCCuGCGCgGCCu -3'
miRNA:   3'- cCGGGCa----------GCCaCUGUCGG-CGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 88346 0.68 0.665752
Target:  5'- uGGUaaCCGUCGccGcUGGCgGCGCUGCCg -3'
miRNA:   3'- -CCG--GGCAGCcaCuGUCGgCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 87583 0.68 0.656269
Target:  5'- aGCCCGUgGccGUGAgCAGaCCGCGgUGCa -3'
miRNA:   3'- cCGGGCAgC--CACU-GUC-GGCGCgACGg -5'
2039 5' -61.7 NC_001347.2 + 84629 0.72 0.420264
Target:  5'- uGGCCuCG-CGGUGGCuGCCGCuacuaCUGUCg -3'
miRNA:   3'- -CCGG-GCaGCCACUGuCGGCGc----GACGG- -5'
2039 5' -61.7 NC_001347.2 + 81599 0.65 0.806099
Target:  5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3'
miRNA:   3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 78404 0.69 0.627748
Target:  5'- gGGCCaCGUCGGgcuGCuGCCGcCGCcacccgGCCc -3'
miRNA:   3'- -CCGG-GCAGCCac-UGuCGGC-GCGa-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 77028 0.67 0.731075
Target:  5'- gGGCCaa-CGGUcGACgcagGGCaCGCGCgUGCCg -3'
miRNA:   3'- -CCGGgcaGCCA-CUG----UCG-GCGCG-ACGG- -5'
2039 5' -61.7 NC_001347.2 + 68729 0.68 0.692155
Target:  5'- cGCUCGUCGGaggccguggagcGAguGCCGCcGCaGCCg -3'
miRNA:   3'- cCGGGCAGCCa-----------CUguCGGCG-CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 67504 0.67 0.74017
Target:  5'- cGCaCCGUCGGUGccgGCGGCCaCGUccGUCa -3'
miRNA:   3'- cCG-GGCAGCCAC---UGUCGGcGCGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.