miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2039 5' -61.7 NC_001347.2 + 36444 0.66 0.784274
Target:  5'- cGGUCCGUCGaGaccGGCGGaCGCGgaGCg -3'
miRNA:   3'- -CCGGGCAGC-Ca--CUGUCgGCGCgaCGg -5'
2039 5' -61.7 NC_001347.2 + 21336 0.66 0.80114
Target:  5'- aGGCUgG-CGGU-AUGGCUGCGC-GCCu -3'
miRNA:   3'- -CCGGgCaGCCAcUGUCGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 196175 0.66 0.800309
Target:  5'- uGCCCGUcaaguacCGGacGCA-CCGCGCcGCCg -3'
miRNA:   3'- cCGGGCA-------GCCacUGUcGGCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 148268 0.66 0.80114
Target:  5'- uGGCCCGUCuGGacgcagaGCAGCgaGCGCaGCa -3'
miRNA:   3'- -CCGGGCAG-CCac-----UGUCGg-CGCGaCGg -5'
2039 5' -61.7 NC_001347.2 + 81599 0.65 0.806099
Target:  5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3'
miRNA:   3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 96185 0.66 0.758107
Target:  5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3'
miRNA:   3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 62437 0.66 0.766935
Target:  5'- gGGCCCGagaCGagaggaGUGGCuGCUGUGUUGUCu -3'
miRNA:   3'- -CCGGGCa--GC------CACUGuCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 38236 0.67 0.721906
Target:  5'- --aCCGUCGGc-GCcGCUGCuGCUGCCg -3'
miRNA:   3'- ccgGGCAGCCacUGuCGGCG-CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 15541 0.67 0.721906
Target:  5'- --aUUGUCGGUGuggaaGCAGCCgaGCGCgagGCCg -3'
miRNA:   3'- ccgGGCAGCCAC-----UGUCGG--CGCGa--CGG- -5'
2039 5' -61.7 NC_001347.2 + 105984 0.67 0.721906
Target:  5'- cGCCCGcgCGGccGCAGCaCGUGUcGCCc -3'
miRNA:   3'- cCGGGCa-GCCacUGUCG-GCGCGaCGG- -5'
2039 5' -61.7 NC_001347.2 + 197747 0.67 0.736541
Target:  5'- cGGCCaggucauccgcgaGUCGGccugcuacGugAGCCGCguGCUGCUa -3'
miRNA:   3'- -CCGGg------------CAGCCa-------CugUCGGCG--CGACGG- -5'
2039 5' -61.7 NC_001347.2 + 77028 0.67 0.731075
Target:  5'- gGGCCaa-CGGUcGACgcagGGCaCGCGCgUGCCg -3'
miRNA:   3'- -CCGGgcaGCCA-CUG----UCG-GCGCG-ACGG- -5'
2039 5' -61.7 NC_001347.2 + 135593 0.67 0.730161
Target:  5'- cGGCCCaccuaccgucgucGUCGGccGACcGCCGCGacccccaGCCg -3'
miRNA:   3'- -CCGGG-------------CAGCCa-CUGuCGGCGCga-----CGG- -5'
2039 5' -61.7 NC_001347.2 + 153077 0.67 0.74017
Target:  5'- cGGCgagaUGUCGa-GGCAGgUGUGCUGCCg -3'
miRNA:   3'- -CCGg---GCAGCcaCUGUCgGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 67504 0.67 0.74017
Target:  5'- cGCaCCGUCGGUGccgGCGGCCaCGUccGUCa -3'
miRNA:   3'- cCG-GGCAGCCAC---UGUCGGcGCGa-CGG- -5'
2039 5' -61.7 NC_001347.2 + 181573 0.67 0.74017
Target:  5'- aGGCCC--UGuGUGACAGCCcaGCaCUGUCg -3'
miRNA:   3'- -CCGGGcaGC-CACUGUCGG--CGcGACGG- -5'
2039 5' -61.7 NC_001347.2 + 184949 0.67 0.749183
Target:  5'- aGCUCGUCGGccggcgugGGCGGCuCGCggagacuggGCUGCa -3'
miRNA:   3'- cCGGGCAGCCa-------CUGUCG-GCG---------CGACGg -5'
2039 5' -61.7 NC_001347.2 + 25631 0.67 0.749183
Target:  5'- cGGUaCGUUGGUcaucuCGGCCGCGUUGUUc -3'
miRNA:   3'- -CCGgGCAGCCAcu---GUCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 183081 0.67 0.749183
Target:  5'- cGGCUgGaaGGccgGACuGCUGUGUUGCCg -3'
miRNA:   3'- -CCGGgCagCCa--CUGuCGGCGCGACGG- -5'
2039 5' -61.7 NC_001347.2 + 93970 0.66 0.766935
Target:  5'- cGCCCcgccgaCGGUGAUucguggucguGGCCaacugGUGCUGCCg -3'
miRNA:   3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.