Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2039 | 5' | -61.7 | NC_001347.2 | + | 36444 | 0.66 | 0.784274 |
Target: 5'- cGGUCCGUCGaGaccGGCGGaCGCGgaGCg -3' miRNA: 3'- -CCGGGCAGC-Ca--CUGUCgGCGCgaCGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 21336 | 0.66 | 0.80114 |
Target: 5'- aGGCUgG-CGGU-AUGGCUGCGC-GCCu -3' miRNA: 3'- -CCGGgCaGCCAcUGUCGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 196175 | 0.66 | 0.800309 |
Target: 5'- uGCCCGUcaaguacCGGacGCA-CCGCGCcGCCg -3' miRNA: 3'- cCGGGCA-------GCCacUGUcGGCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 148268 | 0.66 | 0.80114 |
Target: 5'- uGGCCCGUCuGGacgcagaGCAGCgaGCGCaGCa -3' miRNA: 3'- -CCGGGCAG-CCac-----UGUCGg-CGCGaCGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 81599 | 0.65 | 0.806099 |
Target: 5'- cGGCCgGUCGcucgcgaaaagccGUGGCAuugagacgcacggcGCCGCcGCcgGCCu -3' miRNA: 3'- -CCGGgCAGC-------------CACUGU--------------CGGCG-CGa-CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 96185 | 0.66 | 0.758107 |
Target: 5'- aGGCCuCGggcaCGGgcgUGGCGGCCGUagGC-GCCu -3' miRNA: 3'- -CCGG-GCa---GCC---ACUGUCGGCG--CGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 62437 | 0.66 | 0.766935 |
Target: 5'- gGGCCCGagaCGagaggaGUGGCuGCUGUGUUGUCu -3' miRNA: 3'- -CCGGGCa--GC------CACUGuCGGCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 38236 | 0.67 | 0.721906 |
Target: 5'- --aCCGUCGGc-GCcGCUGCuGCUGCCg -3' miRNA: 3'- ccgGGCAGCCacUGuCGGCG-CGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 15541 | 0.67 | 0.721906 |
Target: 5'- --aUUGUCGGUGuggaaGCAGCCgaGCGCgagGCCg -3' miRNA: 3'- ccgGGCAGCCAC-----UGUCGG--CGCGa--CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 105984 | 0.67 | 0.721906 |
Target: 5'- cGCCCGcgCGGccGCAGCaCGUGUcGCCc -3' miRNA: 3'- cCGGGCa-GCCacUGUCG-GCGCGaCGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 197747 | 0.67 | 0.736541 |
Target: 5'- cGGCCaggucauccgcgaGUCGGccugcuacGugAGCCGCguGCUGCUa -3' miRNA: 3'- -CCGGg------------CAGCCa-------CugUCGGCG--CGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 77028 | 0.67 | 0.731075 |
Target: 5'- gGGCCaa-CGGUcGACgcagGGCaCGCGCgUGCCg -3' miRNA: 3'- -CCGGgcaGCCA-CUG----UCG-GCGCG-ACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 135593 | 0.67 | 0.730161 |
Target: 5'- cGGCCCaccuaccgucgucGUCGGccGACcGCCGCGacccccaGCCg -3' miRNA: 3'- -CCGGG-------------CAGCCa-CUGuCGGCGCga-----CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 153077 | 0.67 | 0.74017 |
Target: 5'- cGGCgagaUGUCGa-GGCAGgUGUGCUGCCg -3' miRNA: 3'- -CCGg---GCAGCcaCUGUCgGCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 67504 | 0.67 | 0.74017 |
Target: 5'- cGCaCCGUCGGUGccgGCGGCCaCGUccGUCa -3' miRNA: 3'- cCG-GGCAGCCAC---UGUCGGcGCGa-CGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 181573 | 0.67 | 0.74017 |
Target: 5'- aGGCCC--UGuGUGACAGCCcaGCaCUGUCg -3' miRNA: 3'- -CCGGGcaGC-CACUGUCGG--CGcGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 184949 | 0.67 | 0.749183 |
Target: 5'- aGCUCGUCGGccggcgugGGCGGCuCGCggagacuggGCUGCa -3' miRNA: 3'- cCGGGCAGCCa-------CUGUCG-GCG---------CGACGg -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 25631 | 0.67 | 0.749183 |
Target: 5'- cGGUaCGUUGGUcaucuCGGCCGCGUUGUUc -3' miRNA: 3'- -CCGgGCAGCCAcu---GUCGGCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 183081 | 0.67 | 0.749183 |
Target: 5'- cGGCUgGaaGGccgGACuGCUGUGUUGCCg -3' miRNA: 3'- -CCGGgCagCCa--CUGuCGGCGCGACGG- -5' |
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2039 | 5' | -61.7 | NC_001347.2 | + | 93970 | 0.66 | 0.766935 |
Target: 5'- cGCCCcgccgaCGGUGAUucguggucguGGCCaacugGUGCUGCCg -3' miRNA: 3'- cCGGGca----GCCACUG----------UCGG-----CGCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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