miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20390 3' -52.5 NC_004687.1 + 73574 0.68 0.938951
Target:  5'- aGCCAGAGGuuGAUGUCCUGCuccagcuUGGcccGACc -3'
miRNA:   3'- -UGGUCUUC--CUGCAGGACGuu-----ACU---CUG- -5'
20390 3' -52.5 NC_004687.1 + 75224 0.68 0.933927
Target:  5'- gACCGGAGGGAuCGgcagCUGUuccGGUGGGACc -3'
miRNA:   3'- -UGGUCUUCCU-GCag--GACG---UUACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 102207 0.68 0.933927
Target:  5'- aGCCGGAGGGccuuguagACGUCCuUGCccagggucuUGGGACc -3'
miRNA:   3'- -UGGUCUUCC--------UGCAGG-ACGuu-------ACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 132009 0.68 0.933927
Target:  5'- gGCCGGAcAGGAcccCGUCCUGUgguuugugagugAGUGAGcCa -3'
miRNA:   3'- -UGGUCU-UCCU---GCAGGACG------------UUACUCuG- -5'
20390 3' -52.5 NC_004687.1 + 20584 0.69 0.891668
Target:  5'- gGCCAGcuGAGGACGgCgCUGCAgcucggcacggAUGAGAUc -3'
miRNA:   3'- -UGGUC--UUCCUGCaG-GACGU-----------UACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 39660 0.7 0.887479
Target:  5'- cGCCGGAAGGccgcaGCGUCCucggcgucgguggcgUGCAGccGGGGCa -3'
miRNA:   3'- -UGGUCUUCC-----UGCAGG---------------ACGUUa-CUCUG- -5'
20390 3' -52.5 NC_004687.1 + 43597 0.7 0.875145
Target:  5'- gGCCgcguGGAAGGACGUCCgggccaagGCGAUGcgucugcgccgcgaGGGCc -3'
miRNA:   3'- -UGG----UCUUCCUGCAGGa-------CGUUAC--------------UCUG- -5'
20390 3' -52.5 NC_004687.1 + 149100 0.7 0.872898
Target:  5'- aACCGGguGGACuGUCCUGCGggcgcucaccgugccGcGAGGCa -3'
miRNA:   3'- -UGGUCuuCCUG-CAGGACGU---------------UaCUCUG- -5'
20390 3' -52.5 NC_004687.1 + 109992 0.7 0.86987
Target:  5'- gGCCAGuGGGucgaaguCGUCCgGCAcGUGGGGCu -3'
miRNA:   3'- -UGGUCuUCCu------GCAGGaCGU-UACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 26427 0.7 0.86987
Target:  5'- cGCUGGGcaguGGGACGUCCUcgGCGAUGuuGCc -3'
miRNA:   3'- -UGGUCU----UCCUGCAGGA--CGUUACucUG- -5'
20390 3' -52.5 NC_004687.1 + 20032 0.7 0.86987
Target:  5'- cACCuGGGAGGACa-CCgaGCAGUGGGACc -3'
miRNA:   3'- -UGG-UCUUCCUGcaGGa-CGUUACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 48644 0.7 0.862926
Target:  5'- gACCAGAAGGuguucgaggccaugGUCCUGCAGgccuacggcGAGACc -3'
miRNA:   3'- -UGGUCUUCCug------------CAGGACGUUa--------CUCUG- -5'
20390 3' -52.5 NC_004687.1 + 14437 0.7 0.862143
Target:  5'- gGCCGGGAGGAaGUucuccuucuucaUCUGCAcguGUGGGGCg -3'
miRNA:   3'- -UGGUCUUCCUgCA------------GGACGU---UACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 134470 0.71 0.846033
Target:  5'- cGCCGGAGGGAUGcgUgUGCAguucggcagGUGGGGCu -3'
miRNA:   3'- -UGGUCUUCCUGCa-GgACGU---------UACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 74878 0.71 0.841037
Target:  5'- uCCAGGAGGGCuacggcgacaagaagGUCCUGCA---GGACu -3'
miRNA:   3'- uGGUCUUCCUG---------------CAGGACGUuacUCUG- -5'
20390 3' -52.5 NC_004687.1 + 47223 0.71 0.837665
Target:  5'- aGCCAGGccaAGGACuaCCUGCAcuaccgcagucGUGGGGCa -3'
miRNA:   3'- -UGGUCU---UCCUGcaGGACGU-----------UACUCUG- -5'
20390 3' -52.5 NC_004687.1 + 154238 0.72 0.783579
Target:  5'- cGCCAGAAGG-CGUUCUGCcgGAUGcgugcuGGCg -3'
miRNA:   3'- -UGGUCUUCCuGCAGGACG--UUACu-----CUG- -5'
20390 3' -52.5 NC_004687.1 + 103327 0.73 0.699619
Target:  5'- cGCCAGAAGGACGUCC-GCuucgcccucGACg -3'
miRNA:   3'- -UGGUCUUCCUGCAGGaCGuuacu----CUG- -5'
20390 3' -52.5 NC_004687.1 + 150535 1.09 0.005353
Target:  5'- aACCAGAAGGACGUCCUGCAAUGAGACu -3'
miRNA:   3'- -UGGUCUUCCUGCAGGACGUUACUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.