miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20390 5' -55.7 NC_004687.1 + 40830 0.66 0.920783
Target:  5'- ---aGCGAggaGauguCGCCGcCGCUGGUGg -3'
miRNA:   3'- cauaCGCUag-Cgu--GUGGC-GCGACCAC- -5'
20390 5' -55.7 NC_004687.1 + 44922 0.66 0.920783
Target:  5'- ---aGUGAcaUCGCGCAgCGCGCcGGa- -3'
miRNA:   3'- cauaCGCU--AGCGUGUgGCGCGaCCac -5'
20390 5' -55.7 NC_004687.1 + 82114 0.66 0.920219
Target:  5'- ---aGCGGUCGCggcggcaGCGCCgguaGCGCgacaGGUGg -3'
miRNA:   3'- cauaCGCUAGCG-------UGUGG----CGCGa---CCAC- -5'
20390 5' -55.7 NC_004687.1 + 92810 0.66 0.920219
Target:  5'- gGUGUGCcgcucugGAUgGUguaGCCGCGCUGgGUGg -3'
miRNA:   3'- -CAUACG-------CUAgCGug-UGGCGCGAC-CAC- -5'
20390 5' -55.7 NC_004687.1 + 53719 0.66 0.915038
Target:  5'- gGUcgGCGGcUCGC-CGCUGCGCUuccGGg- -3'
miRNA:   3'- -CAuaCGCU-AGCGuGUGGCGCGA---CCac -5'
20390 5' -55.7 NC_004687.1 + 143954 0.66 0.915038
Target:  5'- ---gGUGAagGuCAUGCCGUGCUGGUu -3'
miRNA:   3'- cauaCGCUagC-GUGUGGCGCGACCAc -5'
20390 5' -55.7 NC_004687.1 + 130699 0.66 0.909054
Target:  5'- ---gGCGA--GCAUGCCGCGCUguucaacugggcGGUGg -3'
miRNA:   3'- cauaCGCUagCGUGUGGCGCGA------------CCAC- -5'
20390 5' -55.7 NC_004687.1 + 149552 0.66 0.909054
Target:  5'- -gAUGCGGcUCGUACGCCGgaGgaGGUc -3'
miRNA:   3'- caUACGCU-AGCGUGUGGCg-CgaCCAc -5'
20390 5' -55.7 NC_004687.1 + 75294 0.66 0.909054
Target:  5'- -aGUGCGGUCGCcgaGCugaucggcuugGCCGCGUccgaGGUGu -3'
miRNA:   3'- caUACGCUAGCG---UG-----------UGGCGCGa---CCAC- -5'
20390 5' -55.7 NC_004687.1 + 93899 0.66 0.90283
Target:  5'- ---cGCGAUgGCGauaucaGCCGuCGCUGGg- -3'
miRNA:   3'- cauaCGCUAgCGUg-----UGGC-GCGACCac -5'
20390 5' -55.7 NC_004687.1 + 93022 0.66 0.90283
Target:  5'- -gAUGCGucCGCGCAUCcacagGCGCUGGa- -3'
miRNA:   3'- caUACGCuaGCGUGUGG-----CGCGACCac -5'
20390 5' -55.7 NC_004687.1 + 151996 0.66 0.90283
Target:  5'- ---gGCGAgCGCgGCGCCGCGCUugucaGUGa -3'
miRNA:   3'- cauaCGCUaGCG-UGUGGCGCGAc----CAC- -5'
20390 5' -55.7 NC_004687.1 + 52853 0.66 0.90283
Target:  5'- -gGUGCGAUCGUcuuccACAgCG-GCUGGg- -3'
miRNA:   3'- caUACGCUAGCG-----UGUgGCgCGACCac -5'
20390 5' -55.7 NC_004687.1 + 77971 0.66 0.89637
Target:  5'- ---cGCGGUCGCGacauaGCCGCcCcgGGUGa -3'
miRNA:   3'- cauaCGCUAGCGUg----UGGCGcGa-CCAC- -5'
20390 5' -55.7 NC_004687.1 + 84483 0.66 0.89637
Target:  5'- ---cGCGugaGCACcCCGUGCUGGg- -3'
miRNA:   3'- cauaCGCuagCGUGuGGCGCGACCac -5'
20390 5' -55.7 NC_004687.1 + 28684 0.66 0.89637
Target:  5'- ---cGCGuucgcAUCGCGCACCGCccaGCguuccGGUGa -3'
miRNA:   3'- cauaCGC-----UAGCGUGUGGCG---CGa----CCAC- -5'
20390 5' -55.7 NC_004687.1 + 107666 0.66 0.895049
Target:  5'- --uUGCGGUagacgucuaccgGCAUGCCGgGCUGGUa -3'
miRNA:   3'- cauACGCUAg-----------CGUGUGGCgCGACCAc -5'
20390 5' -55.7 NC_004687.1 + 130456 0.66 0.889676
Target:  5'- -cGUGCugcugCGCugGCCGCGCUGc-- -3'
miRNA:   3'- caUACGcua--GCGugUGGCGCGACcac -5'
20390 5' -55.7 NC_004687.1 + 119567 0.67 0.875605
Target:  5'- cUcgGCGGagUCGCugGCCagGUGCUGGg- -3'
miRNA:   3'- cAuaCGCU--AGCGugUGG--CGCGACCac -5'
20390 5' -55.7 NC_004687.1 + 29547 0.67 0.868236
Target:  5'- ---cGCGAUCuGCcccuGCuucuCCGgGCUGGUGg -3'
miRNA:   3'- cauaCGCUAG-CG----UGu---GGCgCGACCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.