miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20391 3' -52.9 NC_004687.1 + 111770 0.66 0.979994
Target:  5'- -cUgACCGGcGGaCCGAGAUCcggguccuggaggaaUACACCGa -3'
miRNA:   3'- cuAgUGGCU-CC-GGUUCUAG---------------AUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 91911 0.66 0.979091
Target:  5'- cGAUCAuCCGGGGC-GAGAacgcccugCUGgGCCGg -3'
miRNA:   3'- -CUAGU-GGCUCCGgUUCUa-------GAUgUGGC- -5'
20391 3' -52.9 NC_004687.1 + 54044 0.66 0.979091
Target:  5'- uGAUCcugGCCGAcGCCAAGGUC-GCGCg- -3'
miRNA:   3'- -CUAG---UGGCUcCGGUUCUAGaUGUGgc -5'
20391 3' -52.9 NC_004687.1 + 131308 0.66 0.979091
Target:  5'- uGGUCAUCGcGGCCAccGAgccggACACCGa -3'
miRNA:   3'- -CUAGUGGCuCCGGUu-CUaga--UGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 80182 0.66 0.979091
Target:  5'- -cUCGCCcuuGGCCAgcgGGAugcUCUGCugCGg -3'
miRNA:   3'- cuAGUGGcu-CCGGU---UCU---AGAUGugGC- -5'
20391 3' -52.9 NC_004687.1 + 102760 0.66 0.979091
Target:  5'- --cCACCGGcgguGGUCuucgAGGAUCUugGCCGu -3'
miRNA:   3'- cuaGUGGCU----CCGG----UUCUAGAugUGGC- -5'
20391 3' -52.9 NC_004687.1 + 68975 0.66 0.979091
Target:  5'- -cUC-CCGGuuGGCCGGGuccaccugCUGCGCCGg -3'
miRNA:   3'- cuAGuGGCU--CCGGUUCua------GAUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 138738 0.66 0.979091
Target:  5'- -cUgACCGAGGCCcuGGAcggcaagcUCgACGCCGa -3'
miRNA:   3'- cuAgUGGCUCCGGu-UCU--------AGaUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 142448 0.66 0.978394
Target:  5'- gGAUgACCGAGGCgAAGAUggACucgcggguggggauGCCGc -3'
miRNA:   3'- -CUAgUGGCUCCGgUUCUAgaUG--------------UGGC- -5'
20391 3' -52.9 NC_004687.1 + 70923 0.66 0.976701
Target:  5'- --aCGCCGAcGGCCu-GAUCggcAUGCCGa -3'
miRNA:   3'- cuaGUGGCU-CCGGuuCUAGa--UGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 34286 0.66 0.976701
Target:  5'- aGcgCGCCaguugguGGCCGAccUCUACACCGa -3'
miRNA:   3'- -CuaGUGGcu-----CCGGUUcuAGAUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 58034 0.66 0.976701
Target:  5'- --cCGgCGGGGCCAGuGAUCUucaGCAUCa -3'
miRNA:   3'- cuaGUgGCUCCGGUU-CUAGA---UGUGGc -5'
20391 3' -52.9 NC_004687.1 + 14480 0.66 0.976701
Target:  5'- cGUCGgccagcCCGAGGCCGcgcgcgacGAUCU-CGCCGg -3'
miRNA:   3'- cUAGU------GGCUCCGGUu-------CUAGAuGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 96040 0.66 0.976701
Target:  5'- cGGUCACCcaguGGGCCAGGGcUCUucguAUGCCu -3'
miRNA:   3'- -CUAGUGGc---UCCGGUUCU-AGA----UGUGGc -5'
20391 3' -52.9 NC_004687.1 + 84568 0.66 0.976701
Target:  5'- -uUCACCGAGGC----GUCUACcGCCu -3'
miRNA:   3'- cuAGUGGCUCCGguucUAGAUG-UGGc -5'
20391 3' -52.9 NC_004687.1 + 117043 0.66 0.976701
Target:  5'- uGAUC-CCGAcccGGCgCAAGGgugGCGCCGa -3'
miRNA:   3'- -CUAGuGGCU---CCG-GUUCUagaUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 100302 0.66 0.976701
Target:  5'- gGAUCACCGAccgauacGCCAaaccAGGaCUACGCCc -3'
miRNA:   3'- -CUAGUGGCUc------CGGU----UCUaGAUGUGGc -5'
20391 3' -52.9 NC_004687.1 + 141873 0.66 0.976701
Target:  5'- --gCGCCGAGaCCcAGAUCgGCACUGu -3'
miRNA:   3'- cuaGUGGCUCcGGuUCUAGaUGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 138248 0.66 0.976701
Target:  5'- cGGUCGaguCCGAGGCCGcGAugcUCU-CGCUGa -3'
miRNA:   3'- -CUAGU---GGCUCCGGUuCU---AGAuGUGGC- -5'
20391 3' -52.9 NC_004687.1 + 128738 0.66 0.976701
Target:  5'- ---gACuCGAGGCCAGuGUCUugcugaACGCCGa -3'
miRNA:   3'- cuagUG-GCUCCGGUUcUAGA------UGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.