miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20391 5' -52.2 NC_004687.1 + 36720 0.66 0.990057
Target:  5'- aCCGGCGgguaggUGAccaUGUCcUUGGCCAUc- -3'
miRNA:   3'- gGGCUGCa-----GCU---ACAGuAACCGGUAca -5'
20391 5' -52.2 NC_004687.1 + 107446 0.66 0.990057
Target:  5'- gCCGACGUacugCGAcggGUCGU-GGUCGUGc -3'
miRNA:   3'- gGGCUGCA----GCUa--CAGUAaCCGGUACa -5'
20391 5' -52.2 NC_004687.1 + 119693 0.66 0.990057
Target:  5'- aCgGGCGUCGGUGaCAUacccGGCCAgaugGUc -3'
miRNA:   3'- gGgCUGCAGCUACaGUAa---CCGGUa---CA- -5'
20391 5' -52.2 NC_004687.1 + 114196 0.66 0.990057
Target:  5'- --gGACGUCGAUggcGUCAcccUUGGCC-UGa -3'
miRNA:   3'- gggCUGCAGCUA---CAGU---AACCGGuACa -5'
20391 5' -52.2 NC_004687.1 + 122078 0.66 0.988696
Target:  5'- aCCCGACGgagCGuagGUCuccuggaUGGCC-UGUa -3'
miRNA:   3'- -GGGCUGCa--GCua-CAGua-----ACCGGuACA- -5'
20391 5' -52.2 NC_004687.1 + 30905 0.66 0.987194
Target:  5'- gCgCGGCGUCGAgggugGUCA--GGCCggGg -3'
miRNA:   3'- -GgGCUGCAGCUa----CAGUaaCCGGuaCa -5'
20391 5' -52.2 NC_004687.1 + 94405 0.66 0.987194
Target:  5'- gCCGGa---GAUGUCGgaGGCCGUGa -3'
miRNA:   3'- gGGCUgcagCUACAGUaaCCGGUACa -5'
20391 5' -52.2 NC_004687.1 + 3276 0.66 0.987194
Target:  5'- gCCaCGGCGgCGGUGUaGUUGGaCCcgGUg -3'
miRNA:   3'- -GG-GCUGCaGCUACAgUAACC-GGuaCA- -5'
20391 5' -52.2 NC_004687.1 + 4644 0.66 0.987194
Target:  5'- aUCGACGUCGGgaaacagGUCGguguagaucUUGGCCucgGUg -3'
miRNA:   3'- gGGCUGCAGCUa------CAGU---------AACCGGua-CA- -5'
20391 5' -52.2 NC_004687.1 + 136323 0.66 0.987194
Target:  5'- gCCCGcCG-CGAUGUCcucGGCCAc-- -3'
miRNA:   3'- -GGGCuGCaGCUACAGuaaCCGGUaca -5'
20391 5' -52.2 NC_004687.1 + 150766 0.66 0.985544
Target:  5'- gCUCGGCG-CGcUG--GUUGGCCAUGUc -3'
miRNA:   3'- -GGGCUGCaGCuACagUAACCGGUACA- -5'
20391 5' -52.2 NC_004687.1 + 36915 0.66 0.985544
Target:  5'- cCuuGAUca-GGUGUCGUUGGCCAc-- -3'
miRNA:   3'- -GggCUGcagCUACAGUAACCGGUaca -5'
20391 5' -52.2 NC_004687.1 + 78791 0.66 0.985544
Target:  5'- cCCCGcCGUUGuAUGUCcgUGGCgGa-- -3'
miRNA:   3'- -GGGCuGCAGC-UACAGuaACCGgUaca -5'
20391 5' -52.2 NC_004687.1 + 8975 0.66 0.983735
Target:  5'- cCCCGAUGcCGugagGUCGUagucGGUCAUGg -3'
miRNA:   3'- -GGGCUGCaGCua--CAGUAa---CCGGUACa -5'
20391 5' -52.2 NC_004687.1 + 75352 0.67 0.98176
Target:  5'- gCCCGACGUCGc--UC-UUGGUCAggGUg -3'
miRNA:   3'- -GGGCUGCAGCuacAGuAACCGGUa-CA- -5'
20391 5' -52.2 NC_004687.1 + 21003 0.67 0.98176
Target:  5'- -aCGGCGUCGAgGcCAaUGGCCAg-- -3'
miRNA:   3'- ggGCUGCAGCUaCaGUaACCGGUaca -5'
20391 5' -52.2 NC_004687.1 + 47358 0.67 0.98176
Target:  5'- gCCGAUaUCGAUGUCGccuggacgGGgCAUGUa -3'
miRNA:   3'- gGGCUGcAGCUACAGUaa------CCgGUACA- -5'
20391 5' -52.2 NC_004687.1 + 20633 0.67 0.97961
Target:  5'- aCCGACaUCGAucuggugaUGUgGUUGGCCGa-- -3'
miRNA:   3'- gGGCUGcAGCU--------ACAgUAACCGGUaca -5'
20391 5' -52.2 NC_004687.1 + 92692 0.67 0.97961
Target:  5'- -gCGGCGUCGAUGcCAccUGGCCc--- -3'
miRNA:   3'- ggGCUGCAGCUACaGUa-ACCGGuaca -5'
20391 5' -52.2 NC_004687.1 + 140086 0.67 0.97961
Target:  5'- gCCgCGACGUCGGUGa-GUcGGCCcUGg -3'
miRNA:   3'- -GG-GCUGCAGCUACagUAaCCGGuACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.