miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20392 3' -49.9 NC_004687.1 + 126748 0.66 0.99725
Target:  5'- uGGaGCCGAUGcUGUCcgaaccggucgGGGACUgUUGUCc -3'
miRNA:   3'- -CCaCGGCUAC-AUAG-----------CCCUGAaGAUAG- -5'
20392 3' -49.9 NC_004687.1 + 136165 0.66 0.996957
Target:  5'- cGGUGggauggacgagaaauUCGAgcgGUGUUGGGGCUUCg--- -3'
miRNA:   3'- -CCAC---------------GGCUa--CAUAGCCCUGAAGauag -5'
20392 3' -49.9 NC_004687.1 + 92018 0.67 0.995517
Target:  5'- cGUGCCgGAUGUcGUCGGGAUcgCcgccgugGUCg -3'
miRNA:   3'- cCACGG-CUACA-UAGCCCUGaaGa------UAG- -5'
20392 3' -49.9 NC_004687.1 + 15131 0.68 0.990732
Target:  5'- ---cCCGAUG-AUCGGcGACUUCgagGUCg -3'
miRNA:   3'- ccacGGCUACaUAGCC-CUGAAGa--UAG- -5'
20392 3' -49.9 NC_004687.1 + 33168 0.68 0.989412
Target:  5'- -aUGCUGGUccGUUGGG-CUUCUGUCc -3'
miRNA:   3'- ccACGGCUAcaUAGCCCuGAAGAUAG- -5'
20392 3' -49.9 NC_004687.1 + 58744 0.68 0.988845
Target:  5'- cGUGCCGcUGgaccacagaggCGGGGCUgCUGUCc -3'
miRNA:   3'- cCACGGCuACaua--------GCCCUGAaGAUAG- -5'
20392 3' -49.9 NC_004687.1 + 89842 0.69 0.975682
Target:  5'- aGGUGgCGGUGgacuucCGGGACUcaggUCUGUg -3'
miRNA:   3'- -CCACgGCUACaua---GCCCUGA----AGAUAg -5'
20392 3' -49.9 NC_004687.1 + 94347 0.71 0.943121
Target:  5'- cGGUGCCGGUGaacGUCGGGuugUUgAUCg -3'
miRNA:   3'- -CCACGGCUACa--UAGCCCugaAGaUAG- -5'
20392 3' -49.9 NC_004687.1 + 134647 0.71 0.942175
Target:  5'- cGGUGCCGAacgucgcgagugGUAcgcccguaaUCGuGACUUCUAUCg -3'
miRNA:   3'- -CCACGGCUa-----------CAU---------AGCcCUGAAGAUAG- -5'
20392 3' -49.9 NC_004687.1 + 18160 0.82 0.44386
Target:  5'- cGGUGCCGGUGUGggcCGGGGCUcgCUGa- -3'
miRNA:   3'- -CCACGGCUACAUa--GCCCUGAa-GAUag -5'
20392 3' -49.9 NC_004687.1 + 152019 1.12 0.00818
Target:  5'- uGGUGCCGAUGUAUCGGGACUUCUAUCc -3'
miRNA:   3'- -CCACGGCUACAUAGCCCUGAAGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.