miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20392 5' -65.1 NC_004687.1 + 98680 0.66 0.532052
Target:  5'- uUCGgCAAGuGGUUCGGCCACgacggauggauuCCgGGCUa -3'
miRNA:   3'- -AGCgGUUC-CCGGGUCGGUG------------GGgCCGG- -5'
20392 5' -65.1 NC_004687.1 + 73782 0.66 0.532052
Target:  5'- cCGCCAcc-GCCaCGGCCACCugucgcgcuaCCGGCg -3'
miRNA:   3'- aGCGGUuccCGG-GUCGGUGG----------GGCCGg -5'
20392 5' -65.1 NC_004687.1 + 142769 0.66 0.532052
Target:  5'- uUCGCCAccauucAGGGagCAGCgGCCagugCGGCUg -3'
miRNA:   3'- -AGCGGU------UCCCggGUCGgUGGg---GCCGG- -5'
20392 5' -65.1 NC_004687.1 + 33610 0.66 0.532052
Target:  5'- aUCGCCAAGgucaugguGGCCCAcggugugggcGCCuaUCCGGCg -3'
miRNA:   3'- -AGCGGUUC--------CCGGGU----------CGGugGGGCCGg -5'
20392 5' -65.1 NC_004687.1 + 145990 0.66 0.532052
Target:  5'- gCGCCcGGcaGGCCCGGacaaCCGCCCgGuGCUa -3'
miRNA:   3'- aGCGGuUC--CCGGGUC----GGUGGGgC-CGG- -5'
20392 5' -65.1 NC_004687.1 + 143756 0.66 0.532052
Target:  5'- aCGUCGgucAGGGCgUAGCCGaUCCGGUUg -3'
miRNA:   3'- aGCGGU---UCCCGgGUCGGUgGGGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 114040 0.66 0.532052
Target:  5'- -aGCCccgGGGGGCCCGGUCG--UCGGCg -3'
miRNA:   3'- agCGG---UUCCCGGGUCGGUggGGCCGg -5'
20392 5' -65.1 NC_004687.1 + 150959 0.66 0.532052
Target:  5'- cCGCCGAGGaucugcGUCCGGaaCC-CCCUGcGCCa -3'
miRNA:   3'- aGCGGUUCC------CGGGUC--GGuGGGGC-CGG- -5'
20392 5' -65.1 NC_004687.1 + 136240 0.66 0.532052
Target:  5'- -gGCCAAGGuGaUCCGGCUG-CCUGGUCa -3'
miRNA:   3'- agCGGUUCC-C-GGGUCGGUgGGGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 110311 0.66 0.532052
Target:  5'- gUUGCguGGGaCCCGGCUGgCgCUGGCCg -3'
miRNA:   3'- -AGCGguUCCcGGGUCGGUgG-GGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 86277 0.66 0.532052
Target:  5'- cCGCCGGuGGGCUCGcCCACCaguGCCa -3'
miRNA:   3'- aGCGGUU-CCCGGGUcGGUGGggcCGG- -5'
20392 5' -65.1 NC_004687.1 + 10909 0.66 0.532052
Target:  5'- aCGCCGaucgaacucuGGGGCCgGGgUgcggagcugGCCCUGGUCu -3'
miRNA:   3'- aGCGGU----------UCCCGGgUCgG---------UGGGGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 62499 0.66 0.532052
Target:  5'- aUGCUGuaauGcGG-UCAGUCACCCCGGCUg -3'
miRNA:   3'- aGCGGUu---C-CCgGGUCGGUGGGGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 146960 0.66 0.532052
Target:  5'- cUGUCucGGGCUCcugauAGCCACCgCCGccGCCa -3'
miRNA:   3'- aGCGGuuCCCGGG-----UCGGUGG-GGC--CGG- -5'
20392 5' -65.1 NC_004687.1 + 24642 0.66 0.532052
Target:  5'- -gGCCAAcGcGCCCgaGGCC-UCCCGGCa -3'
miRNA:   3'- agCGGUUcC-CGGG--UCGGuGGGGCCGg -5'
20392 5' -65.1 NC_004687.1 + 35635 0.66 0.532052
Target:  5'- gUCGCCGGggucguGGGCCUuggagccggAGCCgACCgUCGGCg -3'
miRNA:   3'- -AGCGGUU------CCCGGG---------UCGG-UGG-GGCCGg -5'
20392 5' -65.1 NC_004687.1 + 108745 0.66 0.531122
Target:  5'- cCGCCGAGGaGCCgAugucgguGCUGCUguuCUGGCCg -3'
miRNA:   3'- aGCGGUUCC-CGGgU-------CGGUGG---GGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 144570 0.66 0.522778
Target:  5'- aUCGCuCAGcaccccagucuGGGCCUGGCCAgCCagcucuaucugGGCCg -3'
miRNA:   3'- -AGCG-GUU-----------CCCGGGUCGGUgGGg----------CCGG- -5'
20392 5' -65.1 NC_004687.1 + 42345 0.66 0.522778
Target:  5'- aUCGacuaCGAGGGUCCGGugguuuucgaCCGCaUCGGCCu -3'
miRNA:   3'- -AGCg---GUUCCCGGGUC----------GGUGgGGCCGG- -5'
20392 5' -65.1 NC_004687.1 + 107952 0.66 0.522778
Target:  5'- gCGCCAccGGCuUCGGUCGgCUgGGCCg -3'
miRNA:   3'- aGCGGUucCCG-GGUCGGUgGGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.