miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20393 3' -52 NC_004687.1 + 42685 0.66 0.9894
Target:  5'- gCGcUUCGguGAGCGCcUGGGaggccuCCUguugggcgUCCa -3'
miRNA:   3'- -GC-AAGCguCUUGCGuACCC------GGAa-------AGG- -5'
20393 3' -52 NC_004687.1 + 20023 0.66 0.9894
Target:  5'- uCGgcgUCGCAGAcgaccaccACGCccGGGCCcagCUc -3'
miRNA:   3'- -GCa--AGCGUCU--------UGCGuaCCCGGaaaGG- -5'
20393 3' -52 NC_004687.1 + 87610 0.66 0.9894
Target:  5'- aCGgcUGCAGAGCGCc--GGUCgaggUCCa -3'
miRNA:   3'- -GCaaGCGUCUUGCGuacCCGGaa--AGG- -5'
20393 3' -52 NC_004687.1 + 32097 0.66 0.9894
Target:  5'- gCGUgcgCGCGGAAgGUGgccaGGGCCcuggCCa -3'
miRNA:   3'- -GCAa--GCGUCUUgCGUa---CCCGGaaa-GG- -5'
20393 3' -52 NC_004687.1 + 28685 0.66 0.9894
Target:  5'- gCGUUCGCAucGCGCAcc-GCCcagcgUUCCg -3'
miRNA:   3'- -GCAAGCGUcuUGCGUaccCGGa----AAGG- -5'
20393 3' -52 NC_004687.1 + 129229 0.66 0.987959
Target:  5'- uCGgcgUCGUAGc-CGCcgGuGGCCUcgUCCa -3'
miRNA:   3'- -GCa--AGCGUCuuGCGuaC-CCGGAa-AGG- -5'
20393 3' -52 NC_004687.1 + 131343 0.66 0.986372
Target:  5'- uCGUUgGCcGcGCGCAUGGuGuCCUggcUCCa -3'
miRNA:   3'- -GCAAgCGuCuUGCGUACC-C-GGAa--AGG- -5'
20393 3' -52 NC_004687.1 + 109982 0.66 0.984628
Target:  5'- cCGUgCGCGGGGCcaGUGGGUCgaagucgUCCg -3'
miRNA:   3'- -GCAaGCGUCUUGcgUACCCGGaa-----AGG- -5'
20393 3' -52 NC_004687.1 + 106236 0.66 0.98272
Target:  5'- ---gUGCGGAACGCAUGcaGGCUcgcaUCCu -3'
miRNA:   3'- gcaaGCGUCUUGCGUAC--CCGGaa--AGG- -5'
20393 3' -52 NC_004687.1 + 149702 0.66 0.98272
Target:  5'- gGUUUGCGGugcuUGCccGGGCCgaUCUg -3'
miRNA:   3'- gCAAGCGUCuu--GCGuaCCCGGaaAGG- -5'
20393 3' -52 NC_004687.1 + 31762 0.66 0.98272
Target:  5'- ----aGCAGAccaaGCGCAUGGaGCCggauuacgacUUCCa -3'
miRNA:   3'- gcaagCGUCU----UGCGUACC-CGGa---------AAGG- -5'
20393 3' -52 NC_004687.1 + 64430 0.67 0.980639
Target:  5'- uGUugUCGCGG-GCGUAggugaGGGCCauugUUCCu -3'
miRNA:   3'- gCA--AGCGUCuUGCGUa----CCCGGa---AAGG- -5'
20393 3' -52 NC_004687.1 + 7667 0.67 0.980639
Target:  5'- uCGUgCGCAGcGCGgcaaGUGGGCCgaauggCCc -3'
miRNA:   3'- -GCAaGCGUCuUGCg---UACCCGGaaa---GG- -5'
20393 3' -52 NC_004687.1 + 43790 0.67 0.975923
Target:  5'- gCGUgcgaGUGGGGCaaGUGGGCCU-UCCa -3'
miRNA:   3'- -GCAag--CGUCUUGcgUACCCGGAaAGG- -5'
20393 3' -52 NC_004687.1 + 13934 0.67 0.975923
Target:  5'- -cUUCGUcgGGGACGUAUGGGag--UCCg -3'
miRNA:   3'- gcAAGCG--UCUUGCGUACCCggaaAGG- -5'
20393 3' -52 NC_004687.1 + 35633 0.67 0.973272
Target:  5'- cCG-UCGcCGGggU-CGUGGGCCUUggagCCg -3'
miRNA:   3'- -GCaAGC-GUCuuGcGUACCCGGAAa---GG- -5'
20393 3' -52 NC_004687.1 + 30968 0.67 0.970417
Target:  5'- uGUUCGUcaucccaccGGGugGUacacccacgauAUGGGCgUUUCCa -3'
miRNA:   3'- gCAAGCG---------UCUugCG-----------UACCCGgAAAGG- -5'
20393 3' -52 NC_004687.1 + 31837 0.68 0.964063
Target:  5'- uCGcgCGCGGGAUGUccauUGGGCU--UCCu -3'
miRNA:   3'- -GCaaGCGUCUUGCGu---ACCCGGaaAGG- -5'
20393 3' -52 NC_004687.1 + 51326 0.68 0.963034
Target:  5'- cCGUcUGCAGAuCGUugauGUGGGCCaucagguguucuucUUUCCg -3'
miRNA:   3'- -GCAaGCGUCUuGCG----UACCCGG--------------AAAGG- -5'
20393 3' -52 NC_004687.1 + 18899 0.68 0.952836
Target:  5'- gGUUCGCccuggaccacuGGGACGCGcUGGcGCCgguggCCa -3'
miRNA:   3'- gCAAGCG-----------UCUUGCGU-ACC-CGGaaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.