miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20393 5' -59.1 NC_004687.1 + 110466 0.66 0.788347
Target:  5'- aGUGGAGGcGUCUGUGCccgcaccggUgGCGUCCGg- -3'
miRNA:   3'- -UACCUCU-CAGGCGCG---------AgCGCAGGUgu -5'
20393 5' -59.1 NC_004687.1 + 45875 0.66 0.770081
Target:  5'- gGUGGuG-GUCCGCGagcaGCGUCCGg- -3'
miRNA:   3'- -UACCuCuCAGGCGCgag-CGCAGGUgu -5'
20393 5' -59.1 NC_004687.1 + 134616 0.66 0.760765
Target:  5'- -aGGAuGAGg-CGgGCUCGCuGUCCACc -3'
miRNA:   3'- uaCCU-CUCagGCgCGAGCG-CAGGUGu -5'
20393 5' -59.1 NC_004687.1 + 41717 0.67 0.741811
Target:  5'- uUGGGGGuGUUCGCGUUCGUGaCgGCGc -3'
miRNA:   3'- uACCUCU-CAGGCGCGAGCGCaGgUGU- -5'
20393 5' -59.1 NC_004687.1 + 81659 0.67 0.73219
Target:  5'- gGUGGAGGcggCgGUGCUCGCGUCaACc -3'
miRNA:   3'- -UACCUCUca-GgCGCGAGCGCAGgUGu -5'
20393 5' -59.1 NC_004687.1 + 74709 0.67 0.722485
Target:  5'- gAUGGAGcAGgCCGCuGC-CGgGUCCACc -3'
miRNA:   3'- -UACCUC-UCaGGCG-CGaGCgCAGGUGu -5'
20393 5' -59.1 NC_004687.1 + 143575 0.67 0.692953
Target:  5'- gGUGGAGA-UCCGCGCggGCaacUCCACc -3'
miRNA:   3'- -UACCUCUcAGGCGCGagCGc--AGGUGu -5'
20393 5' -59.1 NC_004687.1 + 63062 0.68 0.632785
Target:  5'- -cGGAGAG-CCGCGacaUCGUcuUCCACGa -3'
miRNA:   3'- uaCCUCUCaGGCGCg--AGCGc-AGGUGU- -5'
20393 5' -59.1 NC_004687.1 + 142476 0.7 0.562648
Target:  5'- gGUGGGGAugCCGCGCUCGCG-CaggaaGCGg -3'
miRNA:   3'- -UACCUCUcaGGCGCGAGCGCaGg----UGU- -5'
20393 5' -59.1 NC_004687.1 + 64079 0.73 0.355486
Target:  5'- cUGGAGA-UCUGCaccuccaGCUCGCGUCCGCc -3'
miRNA:   3'- uACCUCUcAGGCG-------CGAGCGCAGGUGu -5'
20393 5' -59.1 NC_004687.1 + 152174 0.89 0.034819
Target:  5'- cUGGAGAGUCCaCGCUCGCGUUCGCAg -3'
miRNA:   3'- uACCUCUCAGGcGCGAGCGCAGGUGU- -5'
20393 5' -59.1 NC_004687.1 + 152230 1.06 0.002108
Target:  5'- gAUGGAGAGUCCGCGCUCGCGUCCACAg -3'
miRNA:   3'- -UACCUCUCAGGCGCGAGCGCAGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.