miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20394 3' -52.2 NC_004687.1 + 15858 0.66 0.989464
Target:  5'- gCGGCCUaCaACcACAUCGGCguGAUCg -3'
miRNA:   3'- -GCUGGAaGcUGaUGUGGCUGguCUAG- -5'
20394 3' -52.2 NC_004687.1 + 55173 0.66 0.989464
Target:  5'- uCGGCaagcgCUUCGACUACGCCaagcucauGGCCGGu-- -3'
miRNA:   3'- -GCUG-----GAAGCUGAUGUGG--------CUGGUCuag -5'
20394 3' -52.2 NC_004687.1 + 53662 0.66 0.989464
Target:  5'- cCGACCUccaagcacaUCGGCaucgGC-CCGACCugcGGUCc -3'
miRNA:   3'- -GCUGGA---------AGCUGa---UGuGGCUGGu--CUAG- -5'
20394 3' -52.2 NC_004687.1 + 135756 0.66 0.989464
Target:  5'- aGGCCUUCGAuCUGguCCGGCgGuGGUg -3'
miRNA:   3'- gCUGGAAGCU-GAUguGGCUGgU-CUAg -5'
20394 3' -52.2 NC_004687.1 + 7088 0.66 0.989464
Target:  5'- uCGGCCUUgCG-CUccucACGCgCGGCCuGGUCg -3'
miRNA:   3'- -GCUGGAA-GCuGA----UGUG-GCUGGuCUAG- -5'
20394 3' -52.2 NC_004687.1 + 70893 0.66 0.989464
Target:  5'- gGACCUcCGGg-ACGgUGGCCGGGUCc -3'
miRNA:   3'- gCUGGAaGCUgaUGUgGCUGGUCUAG- -5'
20394 3' -52.2 NC_004687.1 + 89522 0.66 0.989464
Target:  5'- cCGACCUggaaGGCcucgACGCCGACgAcGUCg -3'
miRNA:   3'- -GCUGGAag--CUGa---UGUGGCUGgUcUAG- -5'
20394 3' -52.2 NC_004687.1 + 128893 0.66 0.989464
Target:  5'- -cACgaUCGGCU-CAUCGGCUGGAUCu -3'
miRNA:   3'- gcUGgaAGCUGAuGUGGCUGGUCUAG- -5'
20394 3' -52.2 NC_004687.1 + 85274 0.66 0.989464
Target:  5'- cCGACUUgcccgCGACcGCugCGGCCAuGAa- -3'
miRNA:   3'- -GCUGGAa----GCUGaUGugGCUGGU-CUag -5'
20394 3' -52.2 NC_004687.1 + 10125 0.66 0.989464
Target:  5'- gGAgCU-CGACgGCGCCauCCAGAUCg -3'
miRNA:   3'- gCUgGAaGCUGaUGUGGcuGGUCUAG- -5'
20394 3' -52.2 NC_004687.1 + 86316 0.66 0.989464
Target:  5'- uGGCCUcCGGCgGCGCCcgcaGCCcGAUCg -3'
miRNA:   3'- gCUGGAaGCUGaUGUGGc---UGGuCUAG- -5'
20394 3' -52.2 NC_004687.1 + 92098 0.66 0.989464
Target:  5'- uCGACCg-CGuCcGCGCCGAUCAGGa- -3'
miRNA:   3'- -GCUGGaaGCuGaUGUGGCUGGUCUag -5'
20394 3' -52.2 NC_004687.1 + 24490 0.66 0.989464
Target:  5'- gCGACCaUUGACgcgAUCGGCCAGGa- -3'
miRNA:   3'- -GCUGGaAGCUGaugUGGCUGGUCUag -5'
20394 3' -52.2 NC_004687.1 + 79099 0.66 0.989464
Target:  5'- gCGGCg--CGGCgccggGCACCGuggcACCGGGUCu -3'
miRNA:   3'- -GCUGgaaGCUGa----UGUGGC----UGGUCUAG- -5'
20394 3' -52.2 NC_004687.1 + 23934 0.66 0.989327
Target:  5'- cCGGCCUcUCGcacgcagGCUGcCACCGgACCAG-UCa -3'
miRNA:   3'- -GCUGGA-AGC-------UGAU-GUGGC-UGGUCuAG- -5'
20394 3' -52.2 NC_004687.1 + 149612 0.66 0.988037
Target:  5'- uCGGCC-UCGACgau-CCGGCCccGGUCg -3'
miRNA:   3'- -GCUGGaAGCUGauguGGCUGGu-CUAG- -5'
20394 3' -52.2 NC_004687.1 + 21629 0.66 0.988037
Target:  5'- aCGccauCCUggUCgGGCU-CACCGACCAGggCa -3'
miRNA:   3'- -GCu---GGA--AG-CUGAuGUGGCUGGUCuaG- -5'
20394 3' -52.2 NC_004687.1 + 102462 0.66 0.988037
Target:  5'- aCGACCUUgaaGACcuCGCCGucgACCAGGUa -3'
miRNA:   3'- -GCUGGAAg--CUGauGUGGC---UGGUCUAg -5'
20394 3' -52.2 NC_004687.1 + 7875 0.66 0.988037
Target:  5'- uCGGCCUguUCGGCaucGCGCUGGCCu--UCa -3'
miRNA:   3'- -GCUGGA--AGCUGa--UGUGGCUGGucuAG- -5'
20394 3' -52.2 NC_004687.1 + 91997 0.66 0.988037
Target:  5'- uGGCCUgaUCGAgcUUGCgACCGuGCCGGAUg -3'
miRNA:   3'- gCUGGA--AGCU--GAUG-UGGC-UGGUCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.