miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20394 5' -56.5 NC_004687.1 + 15597 0.66 0.894188
Target:  5'- aCAGGCCgUUGGCCAccgAGGaCGacugaGCGGUCa -3'
miRNA:   3'- -GUCUGG-AGCCGGU---UCCgGU-----UGUCAGa -5'
20394 5' -56.5 NC_004687.1 + 137410 0.66 0.894188
Target:  5'- cCAGAggUCGGCagcGGCCAGCAGg-- -3'
miRNA:   3'- -GUCUggAGCCGguuCCGGUUGUCaga -5'
20394 5' -56.5 NC_004687.1 + 18374 0.66 0.894188
Target:  5'- aGGACCUcuucCGGCCAcGGCCcgccGACcaguGUCg -3'
miRNA:   3'- gUCUGGA----GCCGGUuCCGG----UUGu---CAGa -5'
20394 5' -56.5 NC_004687.1 + 35648 0.66 0.887438
Target:  5'- uGGGCCUUGgaGCCGGaGCCGACcGUCg -3'
miRNA:   3'- gUCUGGAGC--CGGUUcCGGUUGuCAGa -5'
20394 5' -56.5 NC_004687.1 + 19437 0.66 0.887438
Target:  5'- aGGACCUgagCGGCCAAG-CCGACcAGg-- -3'
miRNA:   3'- gUCUGGA---GCCGGUUCcGGUUG-UCaga -5'
20394 5' -56.5 NC_004687.1 + 89729 0.66 0.887438
Target:  5'- -uGACCaaccaGGCCAAcGCCGgaACGGUCUg -3'
miRNA:   3'- guCUGGag---CCGGUUcCGGU--UGUCAGA- -5'
20394 5' -56.5 NC_004687.1 + 139322 0.66 0.880461
Target:  5'- gCGGGCuCUCGGUgAuauuGGCCAucuCAGUUg -3'
miRNA:   3'- -GUCUG-GAGCCGgUu---CCGGUu--GUCAGa -5'
20394 5' -56.5 NC_004687.1 + 35697 0.66 0.880461
Target:  5'- -uGACCUCGGCCuc--CCAGUAGUCc -3'
miRNA:   3'- guCUGGAGCCGGuuccGGUUGUCAGa -5'
20394 5' -56.5 NC_004687.1 + 143683 0.66 0.880461
Target:  5'- --cACCcCGGUCGcGGCCAACGGUg- -3'
miRNA:   3'- gucUGGaGCCGGUuCCGGUUGUCAga -5'
20394 5' -56.5 NC_004687.1 + 6310 0.66 0.880461
Target:  5'- -cGACCggGGCCGgaucgucgAGGCCGAC-GUCc -3'
miRNA:   3'- guCUGGagCCGGU--------UCCGGUUGuCAGa -5'
20394 5' -56.5 NC_004687.1 + 141449 0.66 0.879751
Target:  5'- -cGGCCUCGGgCu-GGCCGACgccuacgAGUCc -3'
miRNA:   3'- guCUGGAGCCgGuuCCGGUUG-------UCAGa -5'
20394 5' -56.5 NC_004687.1 + 139652 0.66 0.878324
Target:  5'- -cGACCUgaaccccacgcuugCGGgCAAGGCCGACcuGUCc -3'
miRNA:   3'- guCUGGA--------------GCCgGUUCCGGUUGu-CAGa -5'
20394 5' -56.5 NC_004687.1 + 14475 0.66 0.876168
Target:  5'- gUAGGCgUCGGCCAgcccgAGGCCGcgcGCgacgaucucgccgguGGUCUc -3'
miRNA:   3'- -GUCUGgAGCCGGU-----UCCGGU---UG---------------UCAGA- -5'
20394 5' -56.5 NC_004687.1 + 149605 0.66 0.873262
Target:  5'- cCGGACgUCGGCCucgacgauccGGCCc-CGGUCg -3'
miRNA:   3'- -GUCUGgAGCCGGuu--------CCGGuuGUCAGa -5'
20394 5' -56.5 NC_004687.1 + 129538 0.66 0.873262
Target:  5'- cCAGGCCgggucaCGGCgcGGGCCgGACAGUUc -3'
miRNA:   3'- -GUCUGGa-----GCCGguUCCGG-UUGUCAGa -5'
20394 5' -56.5 NC_004687.1 + 5324 0.66 0.873262
Target:  5'- gAGcaACCUgcUGGCCGAGGCCAagaagaccaACGGcCUg -3'
miRNA:   3'- gUC--UGGA--GCCGGUUCCGGU---------UGUCaGA- -5'
20394 5' -56.5 NC_004687.1 + 31664 0.66 0.873262
Target:  5'- cCAGG-CUCGcCCGcAGGUCGACGGUCa -3'
miRNA:   3'- -GUCUgGAGCcGGU-UCCGGUUGUCAGa -5'
20394 5' -56.5 NC_004687.1 + 125601 0.66 0.871059
Target:  5'- gAGGCCcUGGCCGAGggcGCCAGCAccggauucgccuauGUCa -3'
miRNA:   3'- gUCUGGaGCCGGUUC---CGGUUGU--------------CAGa -5'
20394 5' -56.5 NC_004687.1 + 68593 0.66 0.865845
Target:  5'- gAGGCCgCGaucGCCAAGGCCAucaaGgAGUCc -3'
miRNA:   3'- gUCUGGaGC---CGGUUCCGGU----UgUCAGa -5'
20394 5' -56.5 NC_004687.1 + 140323 0.66 0.865845
Target:  5'- uCAGucguCCUCGGU---GGCCAACGGcCUg -3'
miRNA:   3'- -GUCu---GGAGCCGguuCCGGUUGUCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.