miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20395 3' -58.9 NC_004687.1 + 110749 0.66 0.844824
Target:  5'- cCGAGUACCCgCuggucACCCugGAcCGCgGGUCGa -3'
miRNA:   3'- -GCUCGUGGG-Gu----UGGG--CU-GCGgCUAGC- -5'
20395 3' -58.9 NC_004687.1 + 87447 0.66 0.844824
Target:  5'- cCGGGCucacgACCCCGgauGCgCCGGgucuUGCCGGUCu -3'
miRNA:   3'- -GCUCG-----UGGGGU---UG-GGCU----GCGGCUAGc -5'
20395 3' -58.9 NC_004687.1 + 47752 0.66 0.844824
Target:  5'- aCGAGCACCa-GACCgGcuACG-CGAUCGa -3'
miRNA:   3'- -GCUCGUGGggUUGGgC--UGCgGCUAGC- -5'
20395 3' -58.9 NC_004687.1 + 84914 0.66 0.844824
Target:  5'- uCGAG-ACCCCgGGCCCaGACG-CGGUCc -3'
miRNA:   3'- -GCUCgUGGGG-UUGGG-CUGCgGCUAGc -5'
20395 3' -58.9 NC_004687.1 + 45387 0.66 0.844824
Target:  5'- uCGGGCGCaCCCAGCCUuucauGAucuCGUCGAgcUCGc -3'
miRNA:   3'- -GCUCGUG-GGGUUGGG-----CU---GCGGCU--AGC- -5'
20395 3' -58.9 NC_004687.1 + 116291 0.66 0.844824
Target:  5'- gCGGGCcgucuGCCgaCGGgCCGGUGCCGGUCGg -3'
miRNA:   3'- -GCUCG-----UGGg-GUUgGGCUGCGGCUAGC- -5'
20395 3' -58.9 NC_004687.1 + 27780 0.66 0.844824
Target:  5'- uCGaAGUGCagCCAGCCCGcGCGCUGcUCGa -3'
miRNA:   3'- -GC-UCGUGg-GGUUGGGC-UGCGGCuAGC- -5'
20395 3' -58.9 NC_004687.1 + 115629 0.66 0.844824
Target:  5'- cCGGGCugCgCAACCUgugGGCGCUGuccUCGc -3'
miRNA:   3'- -GCUCGugGgGUUGGG---CUGCGGCu--AGC- -5'
20395 3' -58.9 NC_004687.1 + 146860 0.66 0.844824
Target:  5'- uCGuGCACCCgAGCuuCUGugGCCGGa-- -3'
miRNA:   3'- -GCuCGUGGGgUUG--GGCugCGGCUagc -5'
20395 3' -58.9 NC_004687.1 + 144698 0.66 0.844824
Target:  5'- gCGAGCACCCgCAcuuggccuCCUGGcCGUCGAUg- -3'
miRNA:   3'- -GCUCGUGGG-GUu-------GGGCU-GCGGCUAgc -5'
20395 3' -58.9 NC_004687.1 + 9497 0.66 0.844824
Target:  5'- -aGGCGCCCgGugauaCCGGCGCUG-UCGg -3'
miRNA:   3'- gcUCGUGGGgUug---GGCUGCGGCuAGC- -5'
20395 3' -58.9 NC_004687.1 + 148142 0.66 0.844824
Target:  5'- aGAGCACCCgGuugcGCaCCGugGCCu---- -3'
miRNA:   3'- gCUCGUGGGgU----UG-GGCugCGGcuagc -5'
20395 3' -58.9 NC_004687.1 + 22684 0.66 0.842484
Target:  5'- gCGAGgACCUCGAacaCCGGgucggcgacguuccUGCCGAUCu -3'
miRNA:   3'- -GCUCgUGGGGUUg--GGCU--------------GCGGCUAGc -5'
20395 3' -58.9 NC_004687.1 + 65737 0.66 0.840129
Target:  5'- gCGAGCggcuuguagaaaacaGCUCCAAUCCGGaagagGCCGAgCGg -3'
miRNA:   3'- -GCUCG---------------UGGGGUUGGGCUg----CGGCUaGC- -5'
20395 3' -58.9 NC_004687.1 + 64008 0.66 0.836962
Target:  5'- aGGGCGCaggCCAGgCCG-CGCCGggCa -3'
miRNA:   3'- gCUCGUGg--GGUUgGGCuGCGGCuaGc -5'
20395 3' -58.9 NC_004687.1 + 54129 0.66 0.836962
Target:  5'- gCGAGCGCCCCGGC--GACGUgGGa-- -3'
miRNA:   3'- -GCUCGUGGGGUUGggCUGCGgCUagc -5'
20395 3' -58.9 NC_004687.1 + 145987 0.66 0.836962
Target:  5'- gGAGCGCCCggcaGGCCCGGacaacCGcCCGGUg- -3'
miRNA:   3'- gCUCGUGGGg---UUGGGCU-----GC-GGCUAgc -5'
20395 3' -58.9 NC_004687.1 + 79216 0.66 0.836962
Target:  5'- aGAGCACCaucuCCGGCUuguaCGGCaCCGGUCa -3'
miRNA:   3'- gCUCGUGG----GGUUGG----GCUGcGGCUAGc -5'
20395 3' -58.9 NC_004687.1 + 59628 0.66 0.836962
Target:  5'- -aAGCGCCCCAacaaggccACCCG-CGCCa---- -3'
miRNA:   3'- gcUCGUGGGGU--------UGGGCuGCGGcuagc -5'
20395 3' -58.9 NC_004687.1 + 138939 0.66 0.836962
Target:  5'- uCGcGCAUCgCCAGCCUGGaggGCCGcGUCGa -3'
miRNA:   3'- -GCuCGUGG-GGUUGGGCUg--CGGC-UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.