miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20395 5' -52.7 NC_004687.1 + 106363 0.66 0.984185
Target:  5'- cCUCGGUGgcCACCGGGccaCCGGCcucgUugGCc -3'
miRNA:   3'- -GAGCUACa-GUGGCCCa--GGUUG----AugUG- -5'
20395 5' -52.7 NC_004687.1 + 153655 0.66 0.982243
Target:  5'- aCUCGgcGUC-CCGGuaacccUCCAACUucACGCg -3'
miRNA:   3'- -GAGCuaCAGuGGCCc-----AGGUUGA--UGUG- -5'
20395 5' -52.7 NC_004687.1 + 76303 0.66 0.982243
Target:  5'- -aUGAUGUCggcGCCGgaGGUCCGGCguuCGCc -3'
miRNA:   3'- gaGCUACAG---UGGC--CCAGGUUGau-GUG- -5'
20395 5' -52.7 NC_004687.1 + 132853 0.66 0.982243
Target:  5'- -cCGAgaagGcCuuCCGGGUCCAGgaGCGCa -3'
miRNA:   3'- gaGCUa---CaGu-GGCCCAGGUUgaUGUG- -5'
20395 5' -52.7 NC_004687.1 + 103598 0.66 0.982243
Target:  5'- -gUGGUGgUGCCGGGUCCAGCc---- -3'
miRNA:   3'- gaGCUACaGUGGCCCAGGUUGaugug -5'
20395 5' -52.7 NC_004687.1 + 74879 0.66 0.980127
Target:  5'- gUCGGUgGUCACCGccaGGUCgacaAGCUugGCc -3'
miRNA:   3'- gAGCUA-CAGUGGC---CCAGg---UUGAugUG- -5'
20395 5' -52.7 NC_004687.1 + 89517 0.66 0.980127
Target:  5'- --aGcgGUCACCGGGUagCCGAU--CACg -3'
miRNA:   3'- gagCuaCAGUGGCCCA--GGUUGauGUG- -5'
20395 5' -52.7 NC_004687.1 + 135404 0.66 0.980127
Target:  5'- aUCGAg---GCCGGGUCCAugaUGCAg -3'
miRNA:   3'- gAGCUacagUGGCCCAGGUug-AUGUg -5'
20395 5' -52.7 NC_004687.1 + 97068 0.66 0.979906
Target:  5'- gUCGggGUCACCcuucgGGGUCCGcaccaggucguugACcgGCACc -3'
miRNA:   3'- gAGCuaCAGUGG-----CCCAGGU-------------UGa-UGUG- -5'
20395 5' -52.7 NC_004687.1 + 128137 0.66 0.97783
Target:  5'- gUCGAgcagCGCgCGGG-CUGGCUGCACu -3'
miRNA:   3'- gAGCUaca-GUG-GCCCaGGUUGAUGUG- -5'
20395 5' -52.7 NC_004687.1 + 136643 0.66 0.97783
Target:  5'- gUgGGUGgCGCCGaGGUUCucCUGCACg -3'
miRNA:   3'- gAgCUACaGUGGC-CCAGGuuGAUGUG- -5'
20395 5' -52.7 NC_004687.1 + 101012 0.66 0.975341
Target:  5'- uCUCGGUGauggUGCCGGuGUUCAgaGCUGCGg -3'
miRNA:   3'- -GAGCUACa---GUGGCC-CAGGU--UGAUGUg -5'
20395 5' -52.7 NC_004687.1 + 92124 0.66 0.972655
Target:  5'- gUUGcgGUCGCCGGuGcCCGACgacgACAg -3'
miRNA:   3'- gAGCuaCAGUGGCC-CaGGUUGa---UGUg -5'
20395 5' -52.7 NC_004687.1 + 27497 0.66 0.97181
Target:  5'- gUCGAcaagCGCCGGGUCCccaaggaugcgaacGGCUgGCGCa -3'
miRNA:   3'- gAGCUaca-GUGGCCCAGG--------------UUGA-UGUG- -5'
20395 5' -52.7 NC_004687.1 + 46079 0.67 0.970946
Target:  5'- aCUCGGUGgcggGCCGGGaguaguucggcucacUCCGGC-ACACc -3'
miRNA:   3'- -GAGCUACag--UGGCCC---------------AGGUUGaUGUG- -5'
20395 5' -52.7 NC_004687.1 + 40216 0.67 0.969764
Target:  5'- aUCGcgGUaCugCaugagcaguccaGGGUCCAGCUGCGg -3'
miRNA:   3'- gAGCuaCA-GugG------------CCCAGGUUGAUGUg -5'
20395 5' -52.7 NC_004687.1 + 78557 0.67 0.966661
Target:  5'- -aCGAUGUCGCUGGacacGUCguACUGCu- -3'
miRNA:   3'- gaGCUACAGUGGCC----CAGguUGAUGug -5'
20395 5' -52.7 NC_004687.1 + 8205 0.67 0.966661
Target:  5'- gUCGAUGUC-CUGG--CUGGCUGCGCg -3'
miRNA:   3'- gAGCUACAGuGGCCcaGGUUGAUGUG- -5'
20395 5' -52.7 NC_004687.1 + 112507 0.67 0.966661
Target:  5'- aUCGAUGuagcgaUCGCCGaGUCCGGCaGCAg -3'
miRNA:   3'- gAGCUAC------AGUGGCcCAGGUUGaUGUg -5'
20395 5' -52.7 NC_004687.1 + 56799 0.67 0.963339
Target:  5'- aUCGcgGUCACUauGGGUCUcggcuGACUGCu- -3'
miRNA:   3'- gAGCuaCAGUGG--CCCAGG-----UUGAUGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.