miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20396 3' -54.9 NC_004687.1 + 80275 0.66 0.950019
Target:  5'- gAGGCCGgacagGUGucUCUCGGcucGGCggCGGGc -3'
miRNA:   3'- -UCCGGUa----CAU--GGAGCUu--CCGaaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 154395 0.66 0.950019
Target:  5'- gGGGCCcaggguGUGUugCUCGAcGaGUgggCGGGc -3'
miRNA:   3'- -UCCGG------UACAugGAGCUuC-CGaa-GCCC- -5'
20396 3' -54.9 NC_004687.1 + 89518 0.66 0.950019
Target:  5'- uGGGCCG---ACCUgGAAGGCcUCGa- -3'
miRNA:   3'- -UCCGGUacaUGGAgCUUCCGaAGCcc -5'
20396 3' -54.9 NC_004687.1 + 135785 0.66 0.945728
Target:  5'- cGGCCAgc-GCCgCGAacGGGCUgUGGGu -3'
miRNA:   3'- uCCGGUacaUGGaGCU--UCCGAaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 36699 0.66 0.941201
Target:  5'- aGGGCCAagGUGCC-CGAGcGCaccggCGGGu -3'
miRNA:   3'- -UCCGGUa-CAUGGaGCUUcCGaa---GCCC- -5'
20396 3' -54.9 NC_004687.1 + 14302 0.66 0.936437
Target:  5'- cGGGCCAUGaugGCa--GAGGGCUgCGuGGc -3'
miRNA:   3'- -UCCGGUACa--UGgagCUUCCGAaGC-CC- -5'
20396 3' -54.9 NC_004687.1 + 44975 0.66 0.931434
Target:  5'- uGGCCAUGUcGCU--GAAGGUggucgCGGGc -3'
miRNA:   3'- uCCGGUACA-UGGagCUUCCGaa---GCCC- -5'
20396 3' -54.9 NC_004687.1 + 43616 0.67 0.926191
Target:  5'- cGGGCCAaggcgaugcgucUGcGCCgCGAGGGC--CGGGu -3'
miRNA:   3'- -UCCGGU------------ACaUGGaGCUUCCGaaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 10643 0.67 0.926191
Target:  5'- -uGCCAg--GCCUUGAGGaccuCUUCGGGg -3'
miRNA:   3'- ucCGGUacaUGGAGCUUCc---GAAGCCC- -5'
20396 3' -54.9 NC_004687.1 + 3846 0.67 0.920708
Target:  5'- cGGCCAUGUAaaggUCGguGGC--CGGGg -3'
miRNA:   3'- uCCGGUACAUgg--AGCuuCCGaaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 151310 0.67 0.920708
Target:  5'- uGGCCAugUGUACCgcUCGcuGGCUUCu-- -3'
miRNA:   3'- uCCGGU--ACAUGG--AGCuuCCGAAGccc -5'
20396 3' -54.9 NC_004687.1 + 22648 0.67 0.920708
Target:  5'- uGGCCAgcgACCUCaacgaGAAGGCguucUCGGu -3'
miRNA:   3'- uCCGGUacaUGGAG-----CUUCCGa---AGCCc -5'
20396 3' -54.9 NC_004687.1 + 146376 0.67 0.919017
Target:  5'- aAGGCgGUG-GCgUCGGAGGaCUgcugcucguccugcUCGGGg -3'
miRNA:   3'- -UCCGgUACaUGgAGCUUCC-GA--------------AGCCC- -5'
20396 3' -54.9 NC_004687.1 + 89420 0.67 0.902827
Target:  5'- cGGcGCgGUGcgACCUCGAcGGCcUCGGa -3'
miRNA:   3'- -UC-CGgUACa-UGGAGCUuCCGaAGCCc -5'
20396 3' -54.9 NC_004687.1 + 70687 0.67 0.896395
Target:  5'- cGGCCAUGccgcugaCUCGcaaggugauccGAGGCUucUCGGGc -3'
miRNA:   3'- uCCGGUACaug----GAGC-----------UUCCGA--AGCCC- -5'
20396 3' -54.9 NC_004687.1 + 153319 0.68 0.88284
Target:  5'- uGGCgcUGgucgGCCcCGGAGGCUcCGGGg -3'
miRNA:   3'- uCCGguACa---UGGaGCUUCCGAaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 111024 0.68 0.881435
Target:  5'- uGGCCAUGgggau---GGGCUUCGGGc -3'
miRNA:   3'- uCCGGUACauggagcuUCCGAAGCCC- -5'
20396 3' -54.9 NC_004687.1 + 57275 0.68 0.875726
Target:  5'- cAGGCCca-UGCCguaacCGAAGGCUgUGGGc -3'
miRNA:   3'- -UCCGGuacAUGGa----GCUUCCGAaGCCC- -5'
20396 3' -54.9 NC_004687.1 + 30897 0.68 0.868393
Target:  5'- cAGGCUGUGcgcgGCgUCGAGGGUggucaggcCGGGg -3'
miRNA:   3'- -UCCGGUACa---UGgAGCUUCCGaa------GCCC- -5'
20396 3' -54.9 NC_004687.1 + 94963 0.69 0.853093
Target:  5'- gAGGUCG---GCCUCGAAcGGCgcgcuggccgUCGGGg -3'
miRNA:   3'- -UCCGGUacaUGGAGCUU-CCGa---------AGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.