miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20396 5' -56.9 NC_004687.1 + 120426 0.66 0.906297
Target:  5'- cCAUACGGauGGCCU-CGGccacgugcucguaguGCUUGCGGCUc -3'
miRNA:   3'- -GUGUGCU--CUGGAuGCU---------------CGAGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 25487 0.66 0.903849
Target:  5'- aGCACGAGugacgucgucACCgUGCGA---UGCGGCCa -3'
miRNA:   3'- gUGUGCUC----------UGG-AUGCUcgaGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 16384 0.66 0.903849
Target:  5'- gCGCAcCGAGACCaACGGGCgcaagaaGGUCg -3'
miRNA:   3'- -GUGU-GCUCUGGaUGCUCGagcg---CCGG- -5'
20396 5' -56.9 NC_004687.1 + 124259 0.66 0.903849
Target:  5'- gAC-CGucGACCUGCGGGCgaGCcugGGCCa -3'
miRNA:   3'- gUGuGCu-CUGGAUGCUCGagCG---CCGG- -5'
20396 5' -56.9 NC_004687.1 + 102268 0.66 0.903849
Target:  5'- cCGCACGAG-CUUGuccaGGGcCUUGCgGGCCu -3'
miRNA:   3'- -GUGUGCUCuGGAUg---CUC-GAGCG-CCGG- -5'
20396 5' -56.9 NC_004687.1 + 131559 0.66 0.903849
Target:  5'- gACaACGAGACCUggGCGGGCaacauccacgUCGaccaGGCg -3'
miRNA:   3'- gUG-UGCUCUGGA--UGCUCG----------AGCg---CCGg -5'
20396 5' -56.9 NC_004687.1 + 102517 0.66 0.903849
Target:  5'- gCGCAUcAGGCCgaucuUGAGCUUGCucagagugcaGGCCa -3'
miRNA:   3'- -GUGUGcUCUGGau---GCUCGAGCG----------CCGG- -5'
20396 5' -56.9 NC_004687.1 + 24884 0.66 0.903849
Target:  5'- gCACGCG-GGCCUucuUGAGC-CGCucGGCg -3'
miRNA:   3'- -GUGUGCuCUGGAu--GCUCGaGCG--CCGg -5'
20396 5' -56.9 NC_004687.1 + 57771 0.66 0.903231
Target:  5'- uGCGCGAGACggGCGGGUacaccuuccgcgaUCGUccuggugacGGCCc -3'
miRNA:   3'- gUGUGCUCUGgaUGCUCG-------------AGCG---------CCGG- -5'
20396 5' -56.9 NC_004687.1 + 31491 0.66 0.897568
Target:  5'- cCGCGCGcuGCagcaGCGAGacCUCGCGGCg -3'
miRNA:   3'- -GUGUGCucUGga--UGCUC--GAGCGCCGg -5'
20396 5' -56.9 NC_004687.1 + 3196 0.66 0.897568
Target:  5'- cCGCgAUGAGaAUCUGCGGGUccUCGaucaGGCCc -3'
miRNA:   3'- -GUG-UGCUC-UGGAUGCUCG--AGCg---CCGG- -5'
20396 5' -56.9 NC_004687.1 + 9021 0.66 0.897568
Target:  5'- aCACugGGGGCagcACGGGCUC-CGGa- -3'
miRNA:   3'- -GUGugCUCUGga-UGCUCGAGcGCCgg -5'
20396 5' -56.9 NC_004687.1 + 36051 0.66 0.897568
Target:  5'- gCGCACcgacaaGGGCCUGaaccUGGGCccUGCGGCCa -3'
miRNA:   3'- -GUGUGc-----UCUGGAU----GCUCGa-GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 139676 0.66 0.897568
Target:  5'- gCGCGCGGGGguCCagGCGGGCU-G-GGCCa -3'
miRNA:   3'- -GUGUGCUCU--GGa-UGCUCGAgCgCCGG- -5'
20396 5' -56.9 NC_004687.1 + 110036 0.66 0.897568
Target:  5'- cUACACGcccACCcggACGcuGCUCGCGGaCCa -3'
miRNA:   3'- -GUGUGCuc-UGGa--UGCu-CGAGCGCC-GG- -5'
20396 5' -56.9 NC_004687.1 + 112827 0.66 0.897568
Target:  5'- gGCA-GcGGCCUcguGCGAGCUggccaUGUGGCCg -3'
miRNA:   3'- gUGUgCuCUGGA---UGCUCGA-----GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 117590 0.66 0.897568
Target:  5'- gAUGuCGAGGCCguCGuucuGCaUCGCGGCCu -3'
miRNA:   3'- gUGU-GCUCUGGauGCu---CG-AGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 149186 0.66 0.897568
Target:  5'- cCGCAUGAccACCgACGAGgUgcgUGCGGCCa -3'
miRNA:   3'- -GUGUGCUc-UGGaUGCUCgA---GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 69243 0.66 0.896928
Target:  5'- aGCugGcGACCUACGAGgacaccuacagcUUCGacauccuCGGCCa -3'
miRNA:   3'- gUGugCuCUGGAUGCUC------------GAGC-------GCCGG- -5'
20396 5' -56.9 NC_004687.1 + 46133 0.66 0.891063
Target:  5'- ---uCGucGCCUGCG-GUaaUCGCGGCCa -3'
miRNA:   3'- guguGCucUGGAUGCuCG--AGCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.