miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20396 5' -56.9 NC_004687.1 + 699 0.66 0.891063
Target:  5'- gACAgCGAGACCcuUGAacauCUCGCGGUCc -3'
miRNA:   3'- gUGU-GCUCUGGauGCUc---GAGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 1527 0.7 0.682999
Target:  5'- uGCAUGA-ACCUGCGucuGGC-CGUGGCCc -3'
miRNA:   3'- gUGUGCUcUGGAUGC---UCGaGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 1867 0.69 0.722485
Target:  5'- cCACACGAGccGCCU-CGGGCgua-GGCCu -3'
miRNA:   3'- -GUGUGCUC--UGGAuGCUCGagcgCCGG- -5'
20396 5' -56.9 NC_004687.1 + 3196 0.66 0.897568
Target:  5'- cCGCgAUGAGaAUCUGCGGGUccUCGaucaGGCCc -3'
miRNA:   3'- -GUG-UGCUC-UGGAUGCUCG--AGCg---CCGG- -5'
20396 5' -56.9 NC_004687.1 + 5319 0.68 0.814704
Target:  5'- aGCAUGAGcaACCUGCuGGC-CGaGGCCa -3'
miRNA:   3'- gUGUGCUC--UGGAUGcUCGaGCgCCGG- -5'
20396 5' -56.9 NC_004687.1 + 6082 0.66 0.884339
Target:  5'- uCugGCGGGcCCgACGGGCguacUCG-GGCCa -3'
miRNA:   3'- -GugUGCUCuGGaUGCUCG----AGCgCCGG- -5'
20396 5' -56.9 NC_004687.1 + 8172 0.66 0.870243
Target:  5'- aGCGCGAcuGCCcGCGcGCggccugUGCGGCCa -3'
miRNA:   3'- gUGUGCUc-UGGaUGCuCGa-----GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 9021 0.66 0.897568
Target:  5'- aCACugGGGGCagcACGGGCUC-CGGa- -3'
miRNA:   3'- -GUGugCUCUGga-UGCUCGAGcGCCgg -5'
20396 5' -56.9 NC_004687.1 + 9297 0.68 0.788347
Target:  5'- cCGCGCcAGcCCgACG-GCUCGUGGCUg -3'
miRNA:   3'- -GUGUGcUCuGGaUGCuCGAGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 9740 0.66 0.884339
Target:  5'- gCGCugGcAGGCCUucaGAGCggugCGCGcuGCCc -3'
miRNA:   3'- -GUGugC-UCUGGAug-CUCGa---GCGC--CGG- -5'
20396 5' -56.9 NC_004687.1 + 11689 0.72 0.552765
Target:  5'- uCGC-CGAGACCUACGAGC---CGGUCc -3'
miRNA:   3'- -GUGuGCUCUGGAUGCUCGagcGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 12502 0.66 0.870243
Target:  5'- gACGucguUGGGGCCgauCGGGC-CGCGcGCCa -3'
miRNA:   3'- gUGU----GCUCUGGau-GCUCGaGCGC-CGG- -5'
20396 5' -56.9 NC_004687.1 + 13665 0.7 0.682999
Target:  5'- aCAgGCGAGGCCggUAgGGGaaCGCGGUCa -3'
miRNA:   3'- -GUgUGCUCUGG--AUgCUCgaGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 14268 0.72 0.592553
Target:  5'- gGCugGcuGGugCUgcGCGAGCggCGCGGCUg -3'
miRNA:   3'- gUGugC--UCugGA--UGCUCGa-GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 15564 0.68 0.79728
Target:  5'- uCACGCGcGACC-ACGAGCcCGaGGCg -3'
miRNA:   3'- -GUGUGCuCUGGaUGCUCGaGCgCCGg -5'
20396 5' -56.9 NC_004687.1 + 16384 0.66 0.903849
Target:  5'- gCGCAcCGAGACCaACGGGCgcaagaaGGUCg -3'
miRNA:   3'- -GUGU-GCUCUGGaUGCUCGagcg---CCGG- -5'
20396 5' -56.9 NC_004687.1 + 16549 0.69 0.760766
Target:  5'- aGCGcCGAGgugucgGCCUugGuGGCcaccgUCGCGGCCa -3'
miRNA:   3'- gUGU-GCUC------UGGAugC-UCG-----AGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 16913 0.69 0.722485
Target:  5'- gCGCAagGAGAaggaCUACuucgccgaacAGCUCGCGGCCa -3'
miRNA:   3'- -GUGUg-CUCUg---GAUGc---------UCGAGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 17002 0.66 0.877397
Target:  5'- uGCGCGAGGuCCgguuaGCcAGCagCGCGGUCa -3'
miRNA:   3'- gUGUGCUCU-GGa----UGcUCGa-GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 17115 0.67 0.847562
Target:  5'- cCGCACuGGcCCUG-GAGCggcugcgUGCGGCCa -3'
miRNA:   3'- -GUGUGcUCuGGAUgCUCGa------GCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.