miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20396 5' -56.9 NC_004687.1 + 46945 0.71 0.638831
Target:  5'- cCGCcgACGAGACCgcuguggcuucgcGCGuGCUgGUGGCCa -3'
miRNA:   3'- -GUG--UGCUCUGGa------------UGCuCGAgCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 63853 0.72 0.562648
Target:  5'- aCGCGauUGAGGCaCUGCaGGCggCGCGGCCu -3'
miRNA:   3'- -GUGU--GCUCUG-GAUGcUCGa-GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 23289 0.72 0.582548
Target:  5'- uCACAaGAGGCCUACGAGC--GCGaGCUc -3'
miRNA:   3'- -GUGUgCUCUGGAUGCUCGagCGC-CGG- -5'
20396 5' -56.9 NC_004687.1 + 14268 0.72 0.592553
Target:  5'- gGCugGcuGGugCUgcGCGAGCggCGCGGCUg -3'
miRNA:   3'- gUGugC--UCugGA--UGCUCGa-GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 24590 0.72 0.592553
Target:  5'- uGCGCGcGGCCaACGAGCUggucCGCaGCCa -3'
miRNA:   3'- gUGUGCuCUGGaUGCUCGA----GCGcCGG- -5'
20396 5' -56.9 NC_004687.1 + 135168 0.72 0.592553
Target:  5'- gGCugGAGACCUuCG-GCaacgUCGuCGGCCu -3'
miRNA:   3'- gUGugCUCUGGAuGCuCG----AGC-GCCGG- -5'
20396 5' -56.9 NC_004687.1 + 117171 0.72 0.602587
Target:  5'- gCACGCGAccuGAUCUACGAGCggcaCGgGGUg -3'
miRNA:   3'- -GUGUGCU---CUGGAUGCUCGa---GCgCCGg -5'
20396 5' -56.9 NC_004687.1 + 153174 0.72 0.602587
Target:  5'- aCGCugGAGGaucccaacaacgUCUGCGAGUucaUCGCgGGCCu -3'
miRNA:   3'- -GUGugCUCU------------GGAUGCUCG---AGCG-CCGG- -5'
20396 5' -56.9 NC_004687.1 + 49063 0.71 0.611635
Target:  5'- aCGCugGAcuucuucGACCgguacUACGGGCgccgCGUGGCCa -3'
miRNA:   3'- -GUGugCU-------CUGG-----AUGCUCGa---GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 11689 0.72 0.552765
Target:  5'- uCGC-CGAGACCUACGAGC---CGGUCc -3'
miRNA:   3'- -GUGuGCUCUGGAUGCUCGagcGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 137534 0.72 0.552765
Target:  5'- aACGCGAcACUggucgGCGGGC-CGUGGCCg -3'
miRNA:   3'- gUGUGCUcUGGa----UGCUCGaGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 140352 0.73 0.523455
Target:  5'- gGCAgGucGCCU-CGGGCUCGUGGUCg -3'
miRNA:   3'- gUGUgCucUGGAuGCUCGAGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 110910 0.78 0.291234
Target:  5'- gGCGCGAGGCCUACGAGgccaccgagaUCGUccGGCCc -3'
miRNA:   3'- gUGUGCUCUGGAUGCUCg---------AGCG--CCGG- -5'
20396 5' -56.9 NC_004687.1 + 109887 0.78 0.297977
Target:  5'- gGCGCGGGACCUACaucGCgCGCGGCg -3'
miRNA:   3'- gUGUGCUCUGGAUGcu-CGaGCGCCGg -5'
20396 5' -56.9 NC_004687.1 + 57111 0.74 0.448624
Target:  5'- gCGCACG-GGCCUACGccucGCUgGuCGGCCu -3'
miRNA:   3'- -GUGUGCuCUGGAUGCu---CGAgC-GCCGG- -5'
20396 5' -56.9 NC_004687.1 + 141418 0.74 0.457665
Target:  5'- gAgACGAGACCaccgGCGAGaucgucgcgCGCGGCCu -3'
miRNA:   3'- gUgUGCUCUGGa---UGCUCga-------GCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 126481 0.74 0.466802
Target:  5'- aGCugGAGGCCUACGccg-CGCuGGCCa -3'
miRNA:   3'- gUGugCUCUGGAUGCucgaGCG-CCGG- -5'
20396 5' -56.9 NC_004687.1 + 105362 0.73 0.504248
Target:  5'- -uCugGAGACCUACcugagcaagguGGGCggcgacuacgUCGCGGCCu -3'
miRNA:   3'- guGugCUCUGGAUG-----------CUCG----------AGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 35470 0.73 0.513815
Target:  5'- cCACGCGAuGAgccgcaagcaCUACGAGCaCGUGGCCg -3'
miRNA:   3'- -GUGUGCU-CUg---------GAUGCUCGaGCGCCGG- -5'
20396 5' -56.9 NC_004687.1 + 138962 0.73 0.513815
Target:  5'- cCGCGuCGAgGACCUG-GAGCUCGgCGGCg -3'
miRNA:   3'- -GUGU-GCU-CUGGAUgCUCGAGC-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.