miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20397 3' -54.9 NC_004687.1 + 71304 0.66 0.9569
Target:  5'- cGUCUugaucagGCAGAGGugGUCcaaggucuccucgguGAUCU-CGCCg -3'
miRNA:   3'- -CGGA-------CGUCUCCugCAG---------------CUGGAuGUGG- -5'
20397 3' -54.9 NC_004687.1 + 62303 0.66 0.955763
Target:  5'- uGCCUGCAcGAucgugcucaaGGGCGUgGGCagcuucggcACACCg -3'
miRNA:   3'- -CGGACGU-CU----------CCUGCAgCUGga-------UGUGG- -5'
20397 3' -54.9 NC_004687.1 + 128334 0.66 0.955763
Target:  5'- uGCCUGCGGuccugucACGUCcucacGCCgUACACCa -3'
miRNA:   3'- -CGGACGUCucc----UGCAGc----UGG-AUGUGG- -5'
20397 3' -54.9 NC_004687.1 + 100882 0.66 0.955763
Target:  5'- cGUCUGgGcgaauAGcGACGUCGGCCUcuCGCCa -3'
miRNA:   3'- -CGGACgUc----UC-CUGCAGCUGGAu-GUGG- -5'
20397 3' -54.9 NC_004687.1 + 148623 0.66 0.955763
Target:  5'- -aCUGUgugauGGuGGugGUcacCGACCUGCugCa -3'
miRNA:   3'- cgGACG-----UCuCCugCA---GCUGGAUGugG- -5'
20397 3' -54.9 NC_004687.1 + 35440 0.66 0.955763
Target:  5'- gGCCaggucCAGGGGcGCGUUGGCCgucgGCgACCa -3'
miRNA:   3'- -CGGac---GUCUCC-UGCAGCUGGa---UG-UGG- -5'
20397 3' -54.9 NC_004687.1 + 7288 0.66 0.955763
Target:  5'- gGCgUGCAGcAGGuCGgUGACCacCACCa -3'
miRNA:   3'- -CGgACGUC-UCCuGCaGCUGGauGUGG- -5'
20397 3' -54.9 NC_004687.1 + 108215 0.66 0.95538
Target:  5'- cGCCUGCGGGcccugguGGACcgGUucggcgacuaucUGGCCgACACCg -3'
miRNA:   3'- -CGGACGUCU-------CCUG--CA------------GCUGGaUGUGG- -5'
20397 3' -54.9 NC_004687.1 + 5229 0.66 0.954607
Target:  5'- aGCCaGCAGAuccgGGGCGUCaucgagcggcuggaGACCcUGCagGCCg -3'
miRNA:   3'- -CGGaCGUCU----CCUGCAG--------------CUGG-AUG--UGG- -5'
20397 3' -54.9 NC_004687.1 + 127364 0.66 0.951829
Target:  5'- aGCUUGCGcuGAGcGGCcUCGGCCUcgACgACCg -3'
miRNA:   3'- -CGGACGU--CUC-CUGcAGCUGGA--UG-UGG- -5'
20397 3' -54.9 NC_004687.1 + 31753 0.66 0.951829
Target:  5'- gGCCUgaGCGGAcgccuGGACGUUGAagugGCGCUg -3'
miRNA:   3'- -CGGA--CGUCU-----CCUGCAGCUgga-UGUGG- -5'
20397 3' -54.9 NC_004687.1 + 121082 0.66 0.951829
Target:  5'- -aCUGC-GAGGucgaguAUGUCGACCggaccCACCa -3'
miRNA:   3'- cgGACGuCUCC------UGCAGCUGGau---GUGG- -5'
20397 3' -54.9 NC_004687.1 + 101077 0.66 0.951829
Target:  5'- cGCCgGUAGAccuGGGCGcgcUGGCCgcACACCg -3'
miRNA:   3'- -CGGaCGUCU---CCUGCa--GCUGGa-UGUGG- -5'
20397 3' -54.9 NC_004687.1 + 53193 0.66 0.951829
Target:  5'- aGCCgcugGCAaucGAGGGCuaUGAUCUGCGCa -3'
miRNA:   3'- -CGGa---CGU---CUCCUGcaGCUGGAUGUGg -5'
20397 3' -54.9 NC_004687.1 + 111684 0.66 0.951829
Target:  5'- uCCUGC-GAGG-UGUCGGCCcagucGCGCa -3'
miRNA:   3'- cGGACGuCUCCuGCAGCUGGa----UGUGg -5'
20397 3' -54.9 NC_004687.1 + 116245 0.66 0.951424
Target:  5'- cGgCUGCAcgccaccgacgccGAGGACGcugCGGCCUuccgGCGCg -3'
miRNA:   3'- -CgGACGU-------------CUCCUGCa--GCUGGA----UGUGg -5'
20397 3' -54.9 NC_004687.1 + 51698 0.66 0.947668
Target:  5'- cGCCUGCuGgcgaacccgcAGGAguacCG-CGACCUGUACCg -3'
miRNA:   3'- -CGGACGuC----------UCCU----GCaGCUGGAUGUGG- -5'
20397 3' -54.9 NC_004687.1 + 105610 0.66 0.947668
Target:  5'- cCCUGCAGcAGGcCGagGACCUGaugAUCg -3'
miRNA:   3'- cGGACGUC-UCCuGCagCUGGAUg--UGG- -5'
20397 3' -54.9 NC_004687.1 + 81426 0.66 0.947668
Target:  5'- gGCaCUGCcccGGucGGCGUgGGCCUGguCGCCg -3'
miRNA:   3'- -CG-GACG---UCucCUGCAgCUGGAU--GUGG- -5'
20397 3' -54.9 NC_004687.1 + 24943 0.66 0.947668
Target:  5'- gGCCUGaCGGAGGGCcggaGACCccgguccuccCACCa -3'
miRNA:   3'- -CGGAC-GUCUCCUGcag-CUGGau--------GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.