miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20398 3' -55.3 NC_004687.1 + 12721 0.66 0.932495
Target:  5'- -aCGAAAUCGCCGcCGCcaacgGCUGGGUc- -3'
miRNA:   3'- gaGCUUUGGUGGCuGCG-----CGACUCGua -5'
20398 3' -55.3 NC_004687.1 + 117468 0.66 0.932495
Target:  5'- aUCGAGcGCCGCC-ACGgGCgcGAGCAg -3'
miRNA:   3'- gAGCUU-UGGUGGcUGCgCGa-CUCGUa -5'
20398 3' -55.3 NC_004687.1 + 56988 0.66 0.927261
Target:  5'- gCUCGGugcacACCACCGguggccGCGUGCUGccGCAg -3'
miRNA:   3'- -GAGCUu----UGGUGGC------UGCGCGACu-CGUa -5'
20398 3' -55.3 NC_004687.1 + 90475 0.66 0.924003
Target:  5'- -aCGAggUCACCGACcuGCGCUacgcccaggauggccGGGCGa -3'
miRNA:   3'- gaGCUuuGGUGGCUG--CGCGA---------------CUCGUa -5'
20398 3' -55.3 NC_004687.1 + 87708 0.66 0.921782
Target:  5'- aUCGAGgacuccuacuACCgcugGCCGAUGuCGCUGGGCc- -3'
miRNA:   3'- gAGCUU----------UGG----UGGCUGC-GCGACUCGua -5'
20398 3' -55.3 NC_004687.1 + 141207 0.66 0.921782
Target:  5'- aUCGAcgcuccGACCACCcagcggugGACGCGCggacccUGGGCGc -3'
miRNA:   3'- gAGCU------UUGGUGG--------CUGCGCG------ACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 74713 0.66 0.921782
Target:  5'- -cUGAAcACCACCGG-GCGCUGcAGCu- -3'
miRNA:   3'- gaGCUU-UGGUGGCUgCGCGAC-UCGua -5'
20398 3' -55.3 NC_004687.1 + 94849 0.66 0.918378
Target:  5'- gCUCGcgcuGGCCACCGAgGCcgcgaucggcaaggaGCUGuGCAc -3'
miRNA:   3'- -GAGCu---UUGGUGGCUgCG---------------CGACuCGUa -5'
20398 3' -55.3 NC_004687.1 + 72257 0.66 0.91606
Target:  5'- --gGAGACCGCCucGAUGCGCggucaagccuacUGGGCGg -3'
miRNA:   3'- gagCUUUGGUGG--CUGCGCG------------ACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 45511 0.66 0.91606
Target:  5'- -aCGAcACCAUCagcgguauugggGACGCGgUGAGCAc -3'
miRNA:   3'- gaGCUuUGGUGG------------CUGCGCgACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 26692 0.66 0.91606
Target:  5'- -aCGAGGCCACCGGCG-GCUacGAcGCc- -3'
miRNA:   3'- gaGCUUUGGUGGCUGCgCGA--CU-CGua -5'
20398 3' -55.3 NC_004687.1 + 136067 0.66 0.91606
Target:  5'- aUCGAGACCGacuUCGGCGCGgUG-GCc- -3'
miRNA:   3'- gAGCUUUGGU---GGCUGCGCgACuCGua -5'
20398 3' -55.3 NC_004687.1 + 108287 0.66 0.91251
Target:  5'- cCUUGAGACCGCUGGCGUcacugacgucaccggGCUugccGAGCu- -3'
miRNA:   3'- -GAGCUUUGGUGGCUGCG---------------CGA----CUCGua -5'
20398 3' -55.3 NC_004687.1 + 79274 0.66 0.910095
Target:  5'- --aGgcGCgAUCGACGCGgUGAGCGg -3'
miRNA:   3'- gagCuuUGgUGGCUGCGCgACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 53758 0.66 0.910095
Target:  5'- cCUCGAcGGCCAcCCGAaguccaaccCGCUGGGCAc -3'
miRNA:   3'- -GAGCU-UUGGU-GGCUgc-------GCGACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 113810 0.66 0.910095
Target:  5'- aUCGcGACCcCUGGCGCGCggacGGGCu- -3'
miRNA:   3'- gAGCuUUGGuGGCUGCGCGa---CUCGua -5'
20398 3' -55.3 NC_004687.1 + 53167 0.66 0.910095
Target:  5'- cCUCGaAGACCACCGcCG-GUgGAGCGa -3'
miRNA:   3'- -GAGC-UUUGGUGGCuGCgCGaCUCGUa -5'
20398 3' -55.3 NC_004687.1 + 31731 0.66 0.903889
Target:  5'- gCUCcaGGAugCGCCGAuaCGCGgcCUGAGCGg -3'
miRNA:   3'- -GAG--CUUugGUGGCU--GCGC--GACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 131368 0.66 0.903889
Target:  5'- cCUCGGgcgcguuccgcAACCGaggauggcguuCCGGCGgGUUGAGCAa -3'
miRNA:   3'- -GAGCU-----------UUGGU-----------GGCUGCgCGACUCGUa -5'
20398 3' -55.3 NC_004687.1 + 23684 0.66 0.903889
Target:  5'- -aUGAGACCgggcuugcGCCGGa-CGCUGAGCAg -3'
miRNA:   3'- gaGCUUUGG--------UGGCUgcGCGACUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.