miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20398 5' -57.6 NC_004687.1 + 30506 0.66 0.869443
Target:  5'- ---cGCCCucuuCCAGGGUGGUCAucagguagaaccgguCGCg -3'
miRNA:   3'- gcuaCGGGucc-GGUUCCACCAGU---------------GCG- -5'
20398 5' -57.6 NC_004687.1 + 86379 0.66 0.866508
Target:  5'- gCGGUGCCaaaaauGGCCAcggcGGUGGgCACa- -3'
miRNA:   3'- -GCUACGGgu----CCGGUu---CCACCaGUGcg -5'
20398 5' -57.6 NC_004687.1 + 117231 0.66 0.866508
Target:  5'- uCGAUGCggucguagUCGGcGUCGAGGuUGGgCACGCu -3'
miRNA:   3'- -GCUACG--------GGUC-CGGUUCC-ACCaGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 45911 0.66 0.866508
Target:  5'- gGAUGCCCuuGGGCCc--GUGGUaguCGUc -3'
miRNA:   3'- gCUACGGG--UCCGGuucCACCAgu-GCG- -5'
20398 5' -57.6 NC_004687.1 + 24610 0.66 0.866508
Target:  5'- uCGGUGUCC-GGCUc-GGUGGcCGCGa -3'
miRNA:   3'- -GCUACGGGuCCGGuuCCACCaGUGCg -5'
20398 5' -57.6 NC_004687.1 + 126810 0.66 0.866508
Target:  5'- gGAcUGCCCGGGCCGAuGcc-UCACGUg -3'
miRNA:   3'- gCU-ACGGGUCCGGUUcCaccAGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 15543 0.66 0.866508
Target:  5'- aGcUGCCCGcuGCCAu-GUcGGUCACGCg -3'
miRNA:   3'- gCuACGGGUc-CGGUucCA-CCAGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 100879 0.66 0.866508
Target:  5'- uCGcgGCCCAGGUC--GGUGaUC-CGCc -3'
miRNA:   3'- -GCuaCGGGUCCGGuuCCACcAGuGCG- -5'
20398 5' -57.6 NC_004687.1 + 129512 0.66 0.865769
Target:  5'- aGAUGgcCCCAgcgguugucgagcGGCCAGGccgGGUCACGg -3'
miRNA:   3'- gCUAC--GGGU-------------CCGGUUCca-CCAGUGCg -5'
20398 5' -57.6 NC_004687.1 + 75160 0.66 0.86354
Target:  5'- uGAUGgacuggaaCCAGGCCGAGGcccucuacgagaaGGUCACcgGCg -3'
miRNA:   3'- gCUACg-------GGUCCGGUUCCa------------CCAGUG--CG- -5'
20398 5' -57.6 NC_004687.1 + 135305 0.66 0.859028
Target:  5'- uCGAUGUC--GGUCAccagccGGGUGG-CACGCu -3'
miRNA:   3'- -GCUACGGguCCGGU------UCCACCaGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 107803 0.66 0.859028
Target:  5'- nGAcGCCgGGGC---GGUGGccuUCACGCa -3'
miRNA:   3'- gCUaCGGgUCCGguuCCACC---AGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 76140 0.66 0.858268
Target:  5'- gCGcAUGCCCGGGaagaccuccggcaUgAAGGUGGUCuCGa -3'
miRNA:   3'- -GC-UACGGGUCC-------------GgUUCCACCAGuGCg -5'
20398 5' -57.6 NC_004687.1 + 89686 0.66 0.858268
Target:  5'- aCGGUGCCCGacggcgcGGCCu-GGUuccgGGUCcUGCu -3'
miRNA:   3'- -GCUACGGGU-------CCGGuuCCA----CCAGuGCG- -5'
20398 5' -57.6 NC_004687.1 + 39307 0.66 0.851348
Target:  5'- cCGAgcugGgCgAGGCCcAGGcGGUCGCGg -3'
miRNA:   3'- -GCUa---CgGgUCCGGuUCCaCCAGUGCg -5'
20398 5' -57.6 NC_004687.1 + 136914 0.66 0.851348
Target:  5'- uCGAUGCCguGcUCAAGGUGG-CGC-Cg -3'
miRNA:   3'- -GCUACGGguCcGGUUCCACCaGUGcG- -5'
20398 5' -57.6 NC_004687.1 + 72015 0.66 0.851348
Target:  5'- gGAcUGaUCC-GGCCAgcaAGGUGGUgcCGCGCa -3'
miRNA:   3'- gCU-AC-GGGuCCGGU---UCCACCA--GUGCG- -5'
20398 5' -57.6 NC_004687.1 + 59766 0.66 0.851348
Target:  5'- ---cGCgCAGGaCUGAGGUGGUggcuUGCGCa -3'
miRNA:   3'- gcuaCGgGUCC-GGUUCCACCA----GUGCG- -5'
20398 5' -57.6 NC_004687.1 + 140301 0.66 0.851348
Target:  5'- gCGAUGac--GGCCuggcGGuUGGUCACGCg -3'
miRNA:   3'- -GCUACggguCCGGuu--CC-ACCAGUGCG- -5'
20398 5' -57.6 NC_004687.1 + 134811 0.66 0.850569
Target:  5'- --cUGgCCGGGCUugucgccGGGGUGcUCACGCu -3'
miRNA:   3'- gcuACgGGUCCGG-------UUCCACcAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.