miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20399 5' -53.5 NC_004687.1 + 15435 0.66 0.963711
Target:  5'- aGUugUUGGCGuugGUGCCCAcca-CACCGg -3'
miRNA:   3'- -CGugGACCGU---UACGGGUuagaGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 51891 0.66 0.963711
Target:  5'- gGCGCCUccucaGGCAggcucuuuAUGCCCuc-CUCgGCCAg -3'
miRNA:   3'- -CGUGGA-----CCGU--------UACGGGuuaGAG-UGGU- -5'
20399 5' -53.5 NC_004687.1 + 54280 0.66 0.963711
Target:  5'- cCGCgCUGGUGccGCCCAcgCgCACCGu -3'
miRNA:   3'- cGUG-GACCGUuaCGGGUuaGaGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 20291 0.66 0.963711
Target:  5'- cGgACCcaUGGCuggaaGCCCGAccCUCGCCAg -3'
miRNA:   3'- -CgUGG--ACCGuua--CGGGUUa-GAGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 73658 0.66 0.963711
Target:  5'- -aACCaGGCGAUGCgCGAcagcaUCACCAc -3'
miRNA:   3'- cgUGGaCCGUUACGgGUUag---AGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 93538 0.66 0.960159
Target:  5'- gGCACCUGGUg--GCUCAuUCaUC-CCAa -3'
miRNA:   3'- -CGUGGACCGuuaCGGGUuAG-AGuGGU- -5'
20399 5' -53.5 NC_004687.1 + 79656 0.66 0.960159
Target:  5'- gGCGCCcGGCcccugGUCCAGUCgaugGCCAg -3'
miRNA:   3'- -CGUGGaCCGuua--CGGGUUAGag--UGGU- -5'
20399 5' -53.5 NC_004687.1 + 37086 0.66 0.956373
Target:  5'- cGCGCCgauggcGGCAAguUCCAGUC-CACCu -3'
miRNA:   3'- -CGUGGa-----CCGUUacGGGUUAGaGUGGu -5'
20399 5' -53.5 NC_004687.1 + 137202 0.66 0.956373
Target:  5'- aGCACC-GGC--UGCCCAccaccAUCguggagcgCACCAg -3'
miRNA:   3'- -CGUGGaCCGuuACGGGU-----UAGa-------GUGGU- -5'
20399 5' -53.5 NC_004687.1 + 101744 0.66 0.956373
Target:  5'- -gGCCUGGCAcaGCUCGGggugCUCAgcCCAg -3'
miRNA:   3'- cgUGGACCGUuaCGGGUUa---GAGU--GGU- -5'
20399 5' -53.5 NC_004687.1 + 108313 0.66 0.956373
Target:  5'- uCACCgGGCu-UGCCgAG-CUCGCCGc -3'
miRNA:   3'- cGUGGaCCGuuACGGgUUaGAGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 112196 0.66 0.956373
Target:  5'- cCACCgaaGGCAccGCCCuuggcGAUCaUCACCu -3'
miRNA:   3'- cGUGGa--CCGUuaCGGG-----UUAG-AGUGGu -5'
20399 5' -53.5 NC_004687.1 + 72113 0.66 0.955981
Target:  5'- aGCACC-GGCAcgcUGCCCAgccgcaugaaccgGUUggUCGCCGa -3'
miRNA:   3'- -CGUGGaCCGUu--ACGGGU-------------UAG--AGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 36681 0.66 0.953987
Target:  5'- aCGCCgaUGGCGaaguccagggccaagGUGCCCGAgcgCACCGg -3'
miRNA:   3'- cGUGG--ACCGU---------------UACGGGUUagaGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 9356 0.66 0.952349
Target:  5'- cGUGCCUGGCuGGUGCUCGcgCUacuCCu -3'
miRNA:   3'- -CGUGGACCG-UUACGGGUuaGAgu-GGu -5'
20399 5' -53.5 NC_004687.1 + 113664 0.66 0.952349
Target:  5'- gGCACCcgGGUAGUGCuCCAGggcgaACCGc -3'
miRNA:   3'- -CGUGGa-CCGUUACG-GGUUagag-UGGU- -5'
20399 5' -53.5 NC_004687.1 + 110579 0.66 0.952349
Target:  5'- uGUugCUGGCcggGGUGCCCccGGUCggCGCUg -3'
miRNA:   3'- -CGugGACCG---UUACGGG--UUAGa-GUGGu -5'
20399 5' -53.5 NC_004687.1 + 105263 0.66 0.952349
Target:  5'- -gGCCgaagGGCAcgGUGCCCGc-UUCGCCGg -3'
miRNA:   3'- cgUGGa---CCGU--UACGGGUuaGAGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 98396 0.66 0.952349
Target:  5'- uGCGCCaGGUAugcaGCCUg--CUCGCCAu -3'
miRNA:   3'- -CGUGGaCCGUua--CGGGuuaGAGUGGU- -5'
20399 5' -53.5 NC_004687.1 + 77100 0.66 0.952349
Target:  5'- aCGCCcGGCAAU-CCCGAUCcgACCGg -3'
miRNA:   3'- cGUGGaCCGUUAcGGGUUAGagUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.