miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20400 3' -57.5 NC_004687.1 + 64895 0.66 0.866344
Target:  5'- -cGCGCgUGGGCCucggcGCGGcGcGGGCc -3'
miRNA:   3'- gaUGCGgACCUGGuu---UGCC-CaCCCGu -5'
20400 3' -57.5 NC_004687.1 + 48799 0.66 0.866344
Target:  5'- -gACGUC-GGcGCCGGACGGGgccaccUGGGCc -3'
miRNA:   3'- gaUGCGGaCC-UGGUUUGCCC------ACCCGu -5'
20400 3' -57.5 NC_004687.1 + 67957 0.66 0.858827
Target:  5'- aUGCGCagcGGGUCGAACGGGgugaacaGGGCGc -3'
miRNA:   3'- gAUGCGga-CCUGGUUUGCCCa------CCCGU- -5'
20400 3' -57.5 NC_004687.1 + 118318 0.66 0.858827
Target:  5'- -aGCaGCCUGGGCgCGGGCcauGGUGGGg- -3'
miRNA:   3'- gaUG-CGGACCUG-GUUUGc--CCACCCgu -5'
20400 3' -57.5 NC_004687.1 + 88607 0.66 0.858827
Target:  5'- -gGCgGUCUGG-CCGAGCGGGUGcaGCu -3'
miRNA:   3'- gaUG-CGGACCuGGUUUGCCCACc-CGu -5'
20400 3' -57.5 NC_004687.1 + 40845 0.66 0.851109
Target:  5'- --cCGCCgcugGuGGCCGGugccgGGGUGGGCGg -3'
miRNA:   3'- gauGCGGa---C-CUGGUUug---CCCACCCGU- -5'
20400 3' -57.5 NC_004687.1 + 111417 0.66 0.843197
Target:  5'- cCUGCGCCguUGGACCGggugccAGCGGcaccggGGGUc -3'
miRNA:   3'- -GAUGCGG--ACCUGGU------UUGCCca----CCCGu -5'
20400 3' -57.5 NC_004687.1 + 108460 0.66 0.843197
Target:  5'- --cCGCCUaccGugCAGuccuggcCGGGUGGGCAg -3'
miRNA:   3'- gauGCGGAc--CugGUUu------GCCCACCCGU- -5'
20400 3' -57.5 NC_004687.1 + 61203 0.66 0.835096
Target:  5'- -aACGCuCUGGGCCAGcUGGaGaccGGGCGg -3'
miRNA:   3'- gaUGCG-GACCUGGUUuGCC-Ca--CCCGU- -5'
20400 3' -57.5 NC_004687.1 + 44583 0.66 0.835096
Target:  5'- -cGCGCUgGGGCCGgaccAGCGGGgcuacGGCAg -3'
miRNA:   3'- gaUGCGGaCCUGGU----UUGCCCac---CCGU- -5'
20400 3' -57.5 NC_004687.1 + 151622 0.66 0.835096
Target:  5'- gCUGCGCC-GGACCuuGCcGGUGcguagcGGCGc -3'
miRNA:   3'- -GAUGCGGaCCUGGuuUGcCCAC------CCGU- -5'
20400 3' -57.5 NC_004687.1 + 11433 0.66 0.835096
Target:  5'- -aACGCCgaGGACCuGGCcGaGUGGGCc -3'
miRNA:   3'- gaUGCGGa-CCUGGuUUGcC-CACCCGu -5'
20400 3' -57.5 NC_004687.1 + 151879 0.66 0.826813
Target:  5'- -cACGcCCUGGuuccauACCGucUGGGUGGGUc -3'
miRNA:   3'- gaUGC-GGACC------UGGUuuGCCCACCCGu -5'
20400 3' -57.5 NC_004687.1 + 113263 0.66 0.826813
Target:  5'- -aGCGCC-GGAUacugcggAGACGGGUcguaGGGCAg -3'
miRNA:   3'- gaUGCGGaCCUGg------UUUGCCCA----CCCGU- -5'
20400 3' -57.5 NC_004687.1 + 47700 0.66 0.826813
Target:  5'- -gGCGCC-GGAUCGuc--GGUGGGCGg -3'
miRNA:   3'- gaUGCGGaCCUGGUuugcCCACCCGU- -5'
20400 3' -57.5 NC_004687.1 + 10225 0.67 0.818357
Target:  5'- -aACGCCUGGGCCGAcaccuCGGuGagcUGGGa- -3'
miRNA:   3'- gaUGCGGACCUGGUUu----GCC-C---ACCCgu -5'
20400 3' -57.5 NC_004687.1 + 2706 0.67 0.814928
Target:  5'- aCUACGUCgagaagaUGaACCAGGCGGGcaucaugcccgaucUGGGCAu -3'
miRNA:   3'- -GAUGCGG-------ACcUGGUUUGCCC--------------ACCCGU- -5'
20400 3' -57.5 NC_004687.1 + 38887 0.67 0.809735
Target:  5'- uUGCGCCgggucgGGAUCAGGCccGGGaagaccGGGCGg -3'
miRNA:   3'- gAUGCGGa-----CCUGGUUUG--CCCa-----CCCGU- -5'
20400 3' -57.5 NC_004687.1 + 79106 0.67 0.809735
Target:  5'- -gGCGCCgGGcACCGuggcacCGGGUcuGGGCGg -3'
miRNA:   3'- gaUGCGGaCC-UGGUuu----GCCCA--CCCGU- -5'
20400 3' -57.5 NC_004687.1 + 114896 0.67 0.809735
Target:  5'- uCUACuGCCc-GACCAcgcuGugGGaGUGGGCAg -3'
miRNA:   3'- -GAUG-CGGacCUGGU----UugCC-CACCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.